Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq19712 428 1e-117 >seq19712 Length=3212 Score = 428 bits (474), Expect = 1e-117 Identities = 305/349 (87%), Gaps = 1/349 (0%) Strand=Plus/Plus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1897 GATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCAG 1956 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||||||| |||||||||||| ||||||||||||| Sbjct 1957 TAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACG 2016 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||||||||||||| ||||||||| ||||||||| |||| | |||||||| Sbjct 2017 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTG 2076 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTG 391 || |||||||||| | |||| |||||||||| | | |||||||||||||||||| Sbjct 2077 AGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGACGGTACCGC 2136 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 | || ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 2137 AAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGT 2196 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||| ||| |||||||||||||||||||| || | ||||||| Sbjct 2197 TGCTCGGAATCACT-GGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTC 2244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497298113792