Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq7617 168 1e-39 seq4286 156 8e-36 seq926 156 8e-36 seq3584 150 3e-34 seq991 147 4e-33 seq4407 134 3e-29 seq2630 109 1e-21 seq6844 100 5e-19 seq3142 89.7 1e-15 seq1907 87.8 3e-15 seq1326 75.2 2e-11 seq181 73.4 7e-11 >seq7617 Length=25701 Score = 168 bits (186), Expect = 1e-39 Identities = 196/258 (76%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | || || ||| || ||| |||||||||||||||| Sbjct 255 CTTCTTAGAGGGACAAGCGGTATTCAGTCGCACGAAATT-GAG-CAATAACAGGTCTGTG 198 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||||||||| |||||||| |||| | || |||||| | Sbjct 197 ATGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAATGACGGTTTCAGCGAGTTTGGAA 138 Query 191 CCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | ||||| || |||| ||||||| || | | | |||||| ||||| | | | Sbjct 137 TCCTGGCCTGAGCAGGT-TGGGTAAACTGTATCATAACCGTCGTGACTGGGATCGGGGCT 79 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| || | | | |||||||||| ||| ||||| || ||||| ||| ||| ||| Sbjct 78 TGCAATTGTTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGA 19 Query 309 TTACGTCCCTGCCCTTTG 326 |||||||||||||||||| Sbjct 18 TTACGTCCCTGCCCTTTG 1 >seq4286 Length=141198 Score = 156 bits (172), Expect = 8e-36 Identities = 190/253 (75%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | || || ||| || ||| |||||||||||||||| Sbjct 72185 CTTCTTAGAGGGACAAGCGGTATTCAGTCGCACGAAATT-GAG-CAATAACAGGTCTGTG 72128 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||||||||| |||||||| |||| | || |||||| | Sbjct 72127 ATGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAATGACGGTTTCAGCGAGTTTGGAA 72068 Query 191 CCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | ||||| || |||| ||||||| || | | | |||| | ||||| | | | Sbjct 72067 TCCTGGCCTGAGCAGGT-TGGGTAAACTGTATCATAACCGTCGGGACTGGGATCGGGGCT 72009 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| || | | | |||||||||| ||| ||||| || ||||| ||| ||| ||| Sbjct 72008 TGCAATTGTTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGA 71949 Query 309 TTACGTCCCTGCC 321 ||||||||||||| Sbjct 71948 TTACGTCCCTGCC 71936 >seq926 Length=370264 Score = 156 bits (172), Expect = 8e-36 Identities = 193/259 (75%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||| ||||||| | ||| | || || ||| || ||| |||||||| ||||||| Sbjct 315875 CTTCTTGGAGGGACAAGCGGTATTCAGTCGCACGAAATT-GAG-CAATAACAAGTCTGTG 315818 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||||||||| |||||||| |||| | || |||||| | Sbjct 315817 ATGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAGTGACGGTTTCAGCGAGTTTGGAA 315758 Query 191 CCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 || ||||| ||| || ||||||| || | | | |||||| ||||||| | || Sbjct 315757 CCCTGGCCTGAACGGGTTGGGTAAACTGTATCATAACCGTCGTGACTGGGATAGGGGCTT 315698 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||| || | | | |||||||||| ||| ||||| || ||||| ||| ||| || | Sbjct 315697 GCAACCGTTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGGT 315638 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||| ||||||||||| Sbjct 315637 TACGTCCTTGCCCTTTGTA 315619 Score = 138 bits (152), Expect = 2e-30 Identities = 182/247 (74%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||| ||||||| | ||| | || || ||| || ||| |||||||| ||||||| Sbjct 316297 CTTCTTGGAGGGACAAGCGGTATTCAGTCGCACGAAATT-GAG-CAATAACAAGTCTGTG 316240 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||||||||| |||||||| |||| | || |||||| | Sbjct 316239 ATGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAGTGACGGTTTCAGCGAGTTTGGAA 316180 Query 191 CCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 || ||||| ||| || ||||||| || | | | |||||| ||||||| | || Sbjct 316179 CCCTGGCCTGAACGGGTTGGGTAAACTGTATCATAACCGTCGTGACTGGGATAGGGGCTT 316120 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||| || | | | |||||||||| ||| ||||| || ||||| ||| ||| || | Sbjct 316119 GCAACCGTTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGGT 316060 Query 310 TACGTCC 316 ||||||| Sbjct 316059 TACGTCC 316053 >seq3584 Length=85547 Score = 150 bits (166), Expect = 3e-34 Identities = 193/260 (74%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | ||| | || || ||| || ||| ||||||| |||||||| Sbjct 19619 CTTCTTAGAGGGATAAGCGGTATTCAGTCGCACGAAATT-GAG-CAATAACCGGTCTGTG 19562 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||||||| | | |||||| |||| | || |||||| | | Sbjct 19561 ATGCCCTTAGATGTCTGGGGCCGCATGTGAGCTACAATGACGGTTTCAGCGAGTTTAGAA 19502 Query 191 CCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | ||||| || |||| ||||||| || | | | |||||| ||||| | | | Sbjct 19501 TCCTGGCCTGAGCAGGT-TGGGTAAACTGTATTATGACCGTCGTGACTGGGATCGGGGCT 19443 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| || ||| | |||||||||| || ||||| || ||||| ||| ||| ||| Sbjct 19442 TGCAATTGTTCCTCGTGAACGAGGAATTTCTGGTAAGTGCAAGTCATAAGCTTGCGCTGA 19383 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||| |||||||| Sbjct 19382 TTACGTCCCTGTCCTTTGTA 19363 >seq991 Length=221747 Score = 147 bits (162), Expect = 4e-33 Identities = 165/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||| ||||||||||||||||| ||| | |||||||||| |||||||| |||| | Sbjct 44126 GCAATAACGGGTCTGTGATGCCCTTAATTGTCCGGGGCCGCACGTGCGCTACAATGACGG 44185 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 || |||||| | | ||||| || |||| ||||||| || | | | |||| Sbjct 44186 TTTCAGCGAGTTTGGAATCCTGGCCTGAGCAGGT-TGGGTAAACTGTATCATAACCGTCG 44244 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || ||||| | | |||||||| || | | | |||||||||| ||| ||||| || | Sbjct 44245 TGACTGGGATCGGGGCTTGCAATT-TTTCCCGTGAACGAGGAATTCCTGGTAAGTGCAAG 44303 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| ||| ||||||||||||||||||||||| Sbjct 44304 TCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 44340 Score = 122 bits (134), Expect = 2e-25 Identities = 151/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||| ||||||||||||||||| ||| | |||||||||| |||||||| |||| | Sbjct 44718 GCAATAACGGGTCTGTGATGCCCTTAATTGTCCGGGGCCGCACGTGCGCTACAATGACGG 44777 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 || |||||| | | ||||| || |||| ||||||| || | | | |||| Sbjct 44778 TTTCAGCGAGTTTGGAATCCTGGCCTGAGCAGGT-TGGGTAAACTGTATCATAACCGTCG 44836 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || ||||| | | |||||||| || | | | |||||||||| ||| ||||| || | Sbjct 44837 TGACTGGGATCGGGGCTTGCAATT-TTTCCCGTGAACGAGGAATTCCTGGTAAGTGCAAG 44895 Query 292 TCATCAGCACGCGTTGATTACGT 314 |||| ||| ||| ||||||||| Sbjct 44896 TCATAAGCTTGCGGTGATTACGT 44918 >seq4407 Length=57087 Score = 134 bits (148), Expect = 3e-29 Identities = 192/263 (73%), Gaps = 12/263 (5%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCG--GCTCA--AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| | || ||| ||| | | || |||| |||||||||||||| Sbjct 9221 CTTCTTAGAGGGACAAGCGATATTCAGTAGC--ACGAAA--TTGA-GCAATAACAGGTCT 9167 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 |||||||||||| |||| | ||| |||| || ||||| |||||| ||| |||||| Sbjct 9166 GTGATGCCCTTATATGTCCGAGGCTTCACGTGCTCTACAGTGACAGTTCCAGCGAGTTTG 9107 Query 188 TCACCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | | ||||| || |||| || |||| || | | | |||||| ||||| | | Sbjct 9106 GAATCCTGGCCTGAGCAGGT-TGAGTAAACTGTATCATAACCGTCGTGACTGGGATCGGG 9048 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||| | || | | |||||||||| ||| ||||| || ||||| ||| ||| Sbjct 9047 GCTTGCAACTTTTCCCAGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGC 8988 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 8987 TGACTACGTCCCTGCCCTTTGTA 8965 >seq2630 Length=95923 Score = 109 bits (120), Expect = 1e-21 Identities = 184/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||| || | ||| ||| | ||| || ||||| ||||| ||||||||| Sbjct 93867 CTTCTTAGAGGTACGAGCGGTATTCAGTCGCATGAAA--TTGAG-CAATAGCAGGTCTGT 93923 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||| |||| ||||| | |||||||||| |||||||| |||| | || ||||| Sbjct 93924 GATGGCCTTGGATGTCCGGGGCCGCACGTGCGCTACAATGACGGTAGCAGTGAGTTTGAA 93983 Query 190 ACCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||||| || |||| || ||| || | | | |||||| ||||| | | Sbjct 93984 ATGCTGGCCTGAGCAGGT-TGCATAAACTGTATCATAACCGTCGTGACCGGGATCGGGGC 94042 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 || |||| | | | |||||| ||| | | ||||| || ||||| ||| ||| || Sbjct 94043 TTATAATTGTGCCCCGAGAACGAGAAATTCGTGGTAAGTGCAAGTCATAAGCTTGCGCTG 94102 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||| ||||||| Sbjct 94103 ATTACGTCCCTGCACTTTGTA 94123 >seq6844 Length=104492 Score = 100 bits (110), Expect = 5e-19 Identities = 162/224 (72%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| ||||||||| ||||||| ||| ||||||| | ||||| |||| || ||||| | Sbjct 42223 TTGAG-CAATAACAGACCTGTGATTCCCCTAGATGTCCGGGGCCCCACGTGCTCTACAAT 42281 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGA--AGGTCTGGGTAATCT-TGTTAAACT 225 ||| | || |||||| | | ||| | || |||| |||||| || | || | Sbjct 42282 GACGGTTTCAGCGAGTTTGGAATCCTGGTCTGAGCAGGT-TGGGTAGACTGTATTGTAAC 42340 Query 226 CTGTCGTG-CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | |||||| || || | || |||||| | ||| | |||||||||| ||| || | Sbjct 42341 C-GTCGTGACTAAGGTCGGGGC-TTGCAACCGATCCTCGTGAACGAGGAATTCCTGGTGA 42398 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || ||||| |||| || ||||||||||||||| ||||||| Sbjct 42399 GTGCAAGTCATAAGCAAGCACTGATTACGTCCCTGCTCTTTGTA 42442 >seq3142 Length=113787 Score = 89.7 bits (98), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| ||||||||| ||||||| | |||| |||| | | || |||| || |||| | Sbjct 41202 TTGAG-CAATAACAGAACTGTGATTCACTTAAATGTCCGGAGCTGCACATGCTTTACAAT 41260 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTC 226 ||| | || |||||| | | ||| | || |||| ||||||| || | | | Sbjct 41261 GACGGTTTCAGCGAGTTTGGAATCCTGGTCTGAGCAGGT-TGGGTAAACTGTATCATAAC 41319 Query 227 TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 | | || ||||| | | |||||| | | ||| |||||||||| ||| ||||| Sbjct 41320 AGCCTTGACTGGGATCGGGACTTGCAACTGATCTCCTTGAACGAGGAATTCCTGGTAAGT 41379 Query 287 GCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||| ||| ||||||||||| || |||| ||||||| Sbjct 41380 GCAAGTCATAAGCCAGCGTTGATTACTTCTCTGCTCTTTGTA 41421 >seq1907 Length=293579 Score = 87.8 bits (96), Expect = 3e-15 Identities = 83/102 (81%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||| | |||| | || || || || ||| ||||||||||||| ||| Sbjct 292335 TTCTTAGAGGGACAAGCGGCATTCAGTCGCACAAAATT-GAG-CAATAACAGGTCTCTGA 292392 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||| | || ||||||| |||||||| |||||| Sbjct 292393 TGCCCTTAGATGTCCGGGACCGCACGTGCGCTACAATGACAG 292434 >seq1326 Length=435232 Score = 75.2 bits (82), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||| | || || ||||| | ||| ||| |||||||| | || | Sbjct 33607 GCAATAACAGGTCTGTGGTCCCGTTGGATGTCCGAAGCCACACCTGCGCTACAGTAACGG 33666 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 || | |||| | ||||| || |||| |||| || || | | | ||| Sbjct 33667 TTTCAGCAAGTTTGGAATTCTGGCCTGAGCAGGT-TGGGCAAACTGCATCATAACCGTCT 33725 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || | ||| |||| |||||| | || | | | ||||| |||| ||| ||||| || | Sbjct 33726 TGACTGAGATGGAGC-TTGCAACTGTTCCCCGTGAACGAAGAATTCCTTGTAAGTGCAAG 33784 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 ||| ||| ||| ||||| |||||||| |||| Sbjct 33785 TCAAAAGCTTGCGCCGATTATGTCCCTGCTCTTT 33818 >seq181 Length=728196 Score = 73.4 bits (80), Expect = 7e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| ||||||||||| |||||| |||||||||||| | |||||| | || |||| || Sbjct 43341 TTGAG-CAATAACAGGTTTGTGATTCCCTTAGATGTTTGGAGCCGCATGTGCACTACTCT 43283 Query 169 GACAGAGCCAACGAGTT 185 ||| |||||||||| Sbjct 43282 GACGTTTCCAACGAGTT 43266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947009063424