Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq19712 199 8e-49 >seq19712 Length=3212 Score = 199 bits (220), Expect = 8e-49 Identities = 230/313 (73%), Gaps = 20/313 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | ||||| || Sbjct 2171 GGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTACCGTCA------------- 2125 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | |||||| ||||||| || ||| |||||||| |||||| Sbjct 2124 ------TTATCTTCCCGCACAAAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGC 2072 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||| |||| || || |||||| |||||||||| |||||||||||||||||| Sbjct 2071 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 2012 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||||||| |||||||||||| ||||||||| || | |||||||||| | ||| || Sbjct 2011 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 1952 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || |||| ||||||||| | || |||| ||||| |||| || ||| | | Sbjct 1951 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCAGACGCGGGCCGATCTTTCG 1892 Query 301 CCGATGAATCTTT 313 |||| ||||||| Sbjct 1891 GCGATAAATCTTT 1879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068584551296