Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq45 96.9 6e-18 seq8126 87.8 3e-15 seq7617 87.8 3e-15 seq4922 87.8 3e-15 seq734 87.8 3e-15 seq5556 84.2 4e-14 seq14037 82.4 1e-13 seq13867 78.8 2e-12 seq926 73.4 6e-11 >seq45 Length=485841 Score = 96.9 bits (106), Expect = 6e-18 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| | || | || | Sbjct 381462 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGCCGAAAGGCCAAT 381405 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | ||||||||||||||||| ||||||| ||| Sbjct 381404 GGTGCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCAGTCCA 381345 Query 121 GA 122 || Sbjct 381344 GA 381343 >seq8126 Length=20977 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| || | || | Sbjct 18687 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGAAAGGCCAAT 18744 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 18745 GGTGCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 18804 Query 121 GA 122 || Sbjct 18805 GA 18806 >seq7617 Length=25701 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| || | || | Sbjct 13793 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGAAAGGCCAAT 13736 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 13735 GGTGCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 13676 Query 121 GA 122 || Sbjct 13675 GA 13674 >seq4922 Length=94101 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| || | || | Sbjct 8194 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGAAAGGCCAAT 8251 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 8252 GGTGCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 8311 Query 121 GA 122 || Sbjct 8312 GA 8313 >seq734 Length=446040 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| || | || | Sbjct 329927 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGAAAGGCCAAT 329984 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 329985 GGTGCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 330044 Query 121 GA 122 || Sbjct 330045 GA 330046 >seq5556 Length=145760 Score = 84.2 bits (92), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 |||||||||||||| | |||||| || ||||| | || | ||| | || | || || Sbjct 121852 ACGAGAGGAACCGCAGG-TTCAGA-TATTTGGTATATGTGCCTGGCCGAAAGGCCAATGG 121795 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGA 122 |||||| ||||||||| |||||| | ||||||||||||| ||| |||||| ||||| Sbjct 121794 TGCGAAGTTACCATCTGAGGGATTAGGACTGAACGCCTCTAGGTCTGAATCCCGTCCAGA 121735 >seq14037 Length=6966 Score = 82.4 bits (90), Expect = 1e-13 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 4 CGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCC 63 ||||||||||||| | |||||| | ||||| | || | ||| || | || || Sbjct 3767 CGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGAAAGGCCAATGGT 3710 Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGA 122 |||||||||||||||| |||||| | ||||||||||||||||| |||||| ||||| Sbjct 3709 GCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCCGTCCAGA 3651 >seq13867 Length=13818 Score = 78.8 bits (86), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| || | || | Sbjct 5904 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGAAAGGTCAAT 5961 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||||| |||||| | ||||| ||||||||||| |||||| ||| Sbjct 5962 GGTTCGAAGCTACCATCTGAGGGATTAGGACTGAAGGCCTCTAAGTCTGAATCCCGTCCA 6021 Query 121 GA 122 || Sbjct 6022 GA 6023 >seq926 Length=370264 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || ||| || | || | Sbjct 359190 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTACCTGGTCGAAAGGCCAAT 359247 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| | |||| | ||||||||||||| ||| |||||| Sbjct 359248 GGTGCGAAGCTACCATCTGAGGAATTAGGACTGAACGCCTCTAGGTCTGAATCC 359301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819040026112