Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3632 136 3e-27 seq2168 136 3e-27 seq584 113 4e-20 >seq3632 Length=73641 Score = 136 bits (150), Expect = 3e-27 Identities = 516/810 (64%), Gaps = 41/810 (5%) Strand=Plus/Plus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 || ||| ||| || ||| | | |||||| ||||||| || || |||| ||||| Sbjct 31544 AACCCTACTCGGTTTGTAATCCTACCCATCCAGTATGACGAAATATGGCAATACTACAAG 31603 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 || |||| ||||| || |||||||| || || |||||| | || ||||| | | |||| Sbjct 31604 AAAGCGGTCGCTTCGTTTTGGACGGTTGAAGAAGTCGATCTTTCGAAAGATTTCACTGAC 31663 Query 61165 TGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 ||||| || | || |||| || ||||| | ||||| | || || || || Sbjct 31664 TGGGAACGGCTCAAAGTTGGGGAACGGCACTTCATCTCATATGTGCTAGCATTTTTCGCT 31723 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || || || || || || || | |||||||| ||| || || || || | Sbjct 31724 GCCAGTGATGGCATAGTTTTGGAAAACCTGTTGGAACGATTCAGCCAAGAAGTACAGATC 31783 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 | || || ||||||||||| ||| | |||||||| ||||||||||| ||||| || ||| Sbjct 31784 GCAGAAGCTCGTTGTTTCTATGGCATTCAGATTGCAATGGAGAATGTACACTCCGAAATG 31843 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC--------GA 61395 ||| | | || || ||||| || |||| || | | || |||| | || Sbjct 31844 TACTCTCTGCTTATAGATACATATATCAAAGATCCAAAAGAAAAGTGAGCATCTGGTTGA 31903 Query 61396 TTG--------------------TTCAATGCCATCGAG-ACGATACCGG----CGGTGAA 61430 ||| ||| || || || || | | | ||| | Sbjct 31904 TTGTCGTTTATTGTACAGGGATTTTCTATTTAATGCAGTCCGCAATCTGGAATGTGTGGA 31963 Query 61431 GCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACG 61490 || ||||| | ||||| | || |||||| || | | | || |||| ||| | Sbjct 31964 ACGCAAAGCTCAATGGGCGCTGAACTGGATCGGTGACACCAAGTCGACGTTTGCGGAAAG 32023 Query 61491 ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTT 61550 | | |||| | ||| | ||||| || || || ||| || ||||| |||||||| Sbjct 32024 ACTTGTGGCTTATGCTGCAGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTT 32083 Query 61551 TTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACG 61610 ||| | ||||| || ||||| ||||| ||||| || || || |||||| | ||| || Sbjct 32084 CTGGCTTAAGAAGCGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAAGTCG 32143 Query 61611 CGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 |||||| || | ||| || |||||| || | | ||| || | ||| Sbjct 32144 CGACGAAGGTCTACATACGGACTTTGCTTGCATGTTGTACAA---GTACATAAAGAAGAA 32200 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGT--AACTATCGAACAGGAA 61728 || ||| |||| || ||| | || | || || || || || || || | Sbjct 32201 GCCCTCGAAGGAACGAGTGCTAGCAATCATGAAAGATGCTGTTCAAGTA--GAGCATCAG 32258 Query 61729 TTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAG 61788 || | |||| |||||||||||| || ||||||||||| ||| | | |||| || Sbjct 32259 TTCTTCTCTGATGCTTTGCCCGTCAGTCTGATCGGCATGAACTGTAAATTGATGTGTCAA 32318 Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTG 61818 ||| | || ||||||||||| ||||||||| Sbjct 32319 TATGTGGAGTTTGTTGCCGATCGTCTGTTG 32348 >seq2168 Length=109785 Score = 136 bits (150), Expect = 3e-27 Identities = 528/830 (64%), Gaps = 46/830 (6%) Strand=Plus/Plus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 || ||| ||| || ||| | | |||||| ||||||| || || |||| ||||| Sbjct 2194 AACCCTACTCGGTTTGTAATCCTACCCATCCAGTATGACGAAATATGGCAATACTACAAG 2253 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 || |||| ||||| || |||||| || || |||||| | || ||||| | | |||| Sbjct 2254 AAAGCGGTCGCTTCGTTTTGGACGCCCGAAGAAGTCGATCTTTCGAAAGATTTCACTGAC 2313 Query 61165 TGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 ||||| || | || |||| || ||||| | ||||| | || || || || Sbjct 2314 TGGGAACGGCTCAAAGTTGGGGAACGGCACTTCATCTCATATGTGCTAGCATTTTTCGCT 2373 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || || || || || || || | |||||||| ||| || || ||||| | Sbjct 2374 GCCAGTGATGGCATAGTTTTGGAAAACCTGTTGGAACGATTCAGCCAAGAAGTGCAGATC 2433 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 | || || ||||||||||| ||| | ||||| || | || || | |||||||| ||| Sbjct 2434 CCAGAAGCTCGTTGTTTCTATGGCATTCAGATCGCGTTTGAAAACATACACTCGGAAATG 2493 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAA------------------ 61386 ||| || ||||||| ||||| || |||| || | | ||| Sbjct 2494 TACTGTCTTCTCATAGATACATATATCAAAGATCCGAAAGAAAAGTAAGTAGCCTATTGT 2553 Query 61387 -----------CGTG-AACGAT----TGTTCAATGCCA-TCGAGACGATACCGG---CGG 61426 |||| | ||| | || ||||| | ||| | || | || | Sbjct 2554 CTGTCGTTTTTCGTGTAGGGATTTTCTATTTAATGCAATTCG---CAAT-CTGGAATGTG 2609 Query 61427 TGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTG 61486 || | || ||||| | ||||| | || |||||| || | | | || |||| | Sbjct 2610 TGGAACGCAAAGCTCAATGGGCGCTGAACTGGATCGGTGACACCAAGTCGACGTTTGCGG 2669 Query 61487 AACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAA 61546 || || | |||| | ||| | |||||| || || || ||| || ||||| |||| Sbjct 2670 AAAGACTTGTGGCTTATGCTGCGGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAA 2729 Query 61547 TCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATAT 61606 |||| ||| | ||||| || ||||| ||||| ||||| || || || |||||| | ||| Sbjct 2730 TCTTCTGGCTTAAGAAGCGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAA 2789 Query 61607 CACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGA 61666 | || ||||||||| | ||| || ||||| || | | ||| || | || Sbjct 2790 CTCGGGACGAGGGCCTACATACGGACTTTGCCTGCATGTTGTACAA---GTACATAAAGA 2846 Query 61667 ATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGG 61726 | || ||| |||| || ||| | || | || || ||| | || || Sbjct 2847 AGAAGCCCTCGAAGGAACGAGTGCTAGCTATCATGAAAGATGCTGTACAAGTGGAGCACA 2906 Query 61727 AATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGC 61786 |||| | |||| |||||||||||| || ||||||||||| ||| | | |||| | Sbjct 2907 AATTCTTCTCTGATGCTTTGCCCGTCAGTCTGATCGGCATGAACTGTAAATTGATGTGTC 2966 Query 61787 AGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA-TTTGGGTATGAA 61835 ||||| | |||||| |||| || ||| ||||| ||| |||| || ||| Sbjct 2967 AGTATGTGGAATTTATTGCTGATCGTTTGTTGTCCGAGCTTGGATACGAA 3016 >seq584 Length=457511 Score = 113 bits (124), Expect = 4e-20 Identities = 181/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 66281 AGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC 66340 |||| || |||| |||||| ||| | || ||||||| ||| | ||| || || | | Sbjct 424089 AGACCGGGGCACTCATGTGGATCCATAAACGTCCAATCAGCATTATCTTCCACGCGCCTC 424030 Query 66341 ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG 66400 ||||| | ||| |||||||| || || || || || |||||||| ||||| | Sbjct 424029 ATAAACAAATCCGGTATCCACAGTGCAAGAAACAGGTCCCGTGCTCGAATTTCCTCGGCG 423970 Query 66401 CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAG 66460 ||| ||||| || || || | ||| | | || | |||||||||||| ||||| Sbjct 423969 CCGGTGTTTTTACGTAAATCAACGAATTGCTGAACATCCGGATGCCATGGTTCAAGGTAC 423910 Query 66461 ATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTG 66520 | |||||| | || ||||| |||||| || ||||||||||| ||| ||||||| Sbjct 423909 ACGGCGAAAGCACCGGGCCGTTTATTGCCACCCTGATCGACGTAGCGTGCGGTATTGTTG 423850 Query 66521 AAGACACGCAACATCGGTAC 66540 || || | | ||| ||||| Sbjct 423849 AACACCCTGAGCATGGGTAC 423830 Score = 113 bits (124), Expect = 4e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||||| | ||||| || || || || || || |||||||| ||||| || | Sbjct 424676 CCACAAAATGACCAAGGGAAATGGAAGCAAGATTACAAACAGCTATTTCGTCGGGCGAAC 424617 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 |||| |||||||| ||||| |||| || ||||| || || |||| || || |||| Sbjct 424616 TATATTCGACAATCTCGGTACACAAGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGAT 424557 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | || |||||||||||||| || ||||| | |||| ||||| | || || |||| ||||| Sbjct 424556 TGCTTTTGCGATTGCATGCGTCTTTGTAAAGCATGAACGGATTCCCCGTTTCAATTTGGG 424497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397470327233120