Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4788 268 4e-69 seq961 154 6e-35 >seq4788 Length=4699 Score = 268 bits (296), Expect = 4e-69 Identities = 254/323 (79%), Gaps = 26/323 (8%) Strand=Plus/Minus Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 |||||| ||||| | || ||||||||| |||||||||||||||||||||||| | | Sbjct 2358 CTGGCGAAATGGAGCGATACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGT 2299 Query 446 GCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACG-------------- 490 || ||| || ||| || |||||| ||||||||||||| || | Sbjct 2298 GCAAGTATTAGGGCGTGGAAACCCAAATGCGTAATGAAAGTAAATGCTGCTTATGCAGCT 2239 Query 491 GAGGTGGGAAC---CCGTGAGGGT----GCACCATCGACCGATCCTGATGTCTTCGG--- 540 | ||| |||| | || | ||| |||| ||||||||||| ||| | || ||| Sbjct 2238 GTGGTAGGAAAGGGCTGTCAAGGTCCTGGCACTATCGACCGATCATGA-GCCTACGGGCA 2180 Query 541 ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 | |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 2179 AAAGATTTGAGTATGAGCATATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAATA 2120 Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 |||||||||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||| Sbjct 2119 GGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATC 2060 Query 661 GTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||||||| Sbjct 2059 GTCAAATTTGGGTATAGGGGCGA 2037 Score = 190 bits (210), Expect = 9e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||||||| |||||| || | || |||||||| | ||||||||||||| Sbjct 2816 GAGTCGAGTTGTTTGGGAATACAGCTCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 2757 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 2756 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 2697 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| ||||||||||||| || Sbjct 2696 AGAGAGTTAAAGAGTACCTGAAACTGTTGAAAGGGAACCG 2657 >seq961 Length=7998 Score = 154 bits (170), Expect = 6e-35 Identities = 116/135 (86%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| ||||||||| ||||| |||||||||||||||||||||||| || |||| ||||| Sbjct 580 GAGCAAGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCTTAGGCTGAAG 639 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||| ||||| ||||||||||| || ||||||| || |||||||||||||||||||| Sbjct 640 CCAGGGGAAA-TCTGGTGGAGGGCCGAAGCGGTTTTGACGTGCAAATCGATCGTCAAAAG 698 Query 669 TGGGTATAGGGGCGA 683 || | |||||||||| Sbjct 699 TGAGCATAGGGGCGA 713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079869691250