Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq24 340 3e-91 seq2680 295 1e-77 seq3364 293 4e-77 seq2143 293 4e-77 seq298 293 4e-77 seq4788 228 1e-57 seq1 77.0 6e-12 >seq24 Length=2149 Score = 340 bits (376), Expect = 3e-91 Identities = 231/257 (90%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 471 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 412 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 411 TTGGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 352 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 351 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 292 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGA--GGGACTAAAGGATCGAT 267 ||||||||||||||||| ||||||| || |||| | | || | ||||||||||| Sbjct 291 CTGTGGTAACTTTTCTGTCACCTCTTGCTCCAAACTCTGGACCATATCAAAAGGATCGAT 232 Query 268 AGGCCACACTTTCATGG 284 ||||||| |||||| || Sbjct 231 AGGCCACGCTTTCACGG 215 >seq2680 Length=1170 Score = 295 bits (326), Expect = 1e-77 Identities = 180/191 (94%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1073 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1014 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 1013 TTGGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 954 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 953 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 894 Query 211 CTGTGGTAACT 221 ||||||| ||| Sbjct 893 CTGTGGTGACT 883 >seq3364 Length=3809 Score = 293 bits (324), Expect = 4e-77 Identities = 177/187 (95%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3769 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 3710 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 3709 TTGGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 3650 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 3649 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 3590 Query 211 CTGTGGT 217 ||||||| Sbjct 3589 CTGTGGT 3583 >seq2143 Length=1695 Score = 293 bits (324), Expect = 4e-77 Identities = 177/187 (95%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 812 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 871 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 872 TTGGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 931 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 932 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 991 Query 211 CTGTGGT 217 ||||||| Sbjct 992 CTGTGGT 998 >seq298 Length=1139 Score = 293 bits (324), Expect = 4e-77 Identities = 177/187 (95%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 75 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 134 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 135 TTGGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 194 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 195 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 254 Query 211 CTGTGGT 217 ||||||| Sbjct 255 CTGTGGT 261 >seq4788 Length=4699 Score = 228 bits (252), Expect = 1e-57 Identities = 171/201 (85%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 |||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| Sbjct 1 GTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTCGACAT 60 Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 CGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTG 120 Query 214 TGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273 |||||||||||||| |||||| || | ||| | | | |||||||| ||||| Sbjct 121 TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCC 180 Query 274 CACTTTCATGGTTTGTATTCA 294 | |||||| ||| |||||||| Sbjct 181 CGCTTTCACGGTCTGTATTCA 201 >seq1 Length=50294 Score = 77.0 bits (84), Expect = 6e-12 Identities = 122/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109 || |||||||| |||| | | |||||||||||||| || ||| || ||||| | Sbjct 27442 AAACTGTCTCACGACGTTTTGAACCCAGCTCACGTACCACTTTAAATGGCGAACAGCCAT 27383 Query 110 ACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 || ||| |||| | | | ||| || ||||||||||||| | |||| || Sbjct 27382 ACCCTTGGGAGCTTCTCCACCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACTGC 27323 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| || | |||| ||||||||| ||||||||| Sbjct 27322 GTCGTCGATATGAACTCTTGGACGCAATCAGCCTGTTATCCCTAGAGTAACTTTT 27268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854348095200