Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-45 >seq1 Length=50294 Score = 188 bits (208), Expect = 1e-45 Identities = 215/286 (75%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGT-CCAGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| ||||| |||||| | ||| ||||||| | |||||||| |||| Sbjct 23703 CCCACGCTTTCGTCTCTCAGTGTCAGT-AGTGTTCCAGCAAGCTGCCTTCGCTTTTGGTA 23645 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||| | | |||| ||| ||| |||| |||| || | ||| | |||||||||| || Sbjct 23644 TTCTTGTATGTATCAACGGATTGCACCCCTACTCATACAGTTCTGCTTGCCTCTCCCACA 23585 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| | |||||| | ||| | ||||||||||| | |||||| | ||| Sbjct 23584 CTCAAGTTCGATAGTTTCCCAAGCAAGTACAGGGTTGAGCCCTGACCTTTCACTTGAGAC 23525 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || || || |||||| | |||||| |||| ||| ||||||||||||||| ||| | Sbjct 23524 TTTCCGAACCACCTACAGACGCTTTACGCCCAGTAATTCCGGATAACGCTTGGGGCCTTC 23465 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||||||||||||||||| |||| |||| |||||||||| Sbjct 23464 GTATTACCGCGGCTGCTGGCACGAAGTTTGCCGCCCCTTATTCCTC 23419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828751223825