Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1 206 9e-51 >seq1 Length=50294 Score = 206 bits (228), Expect = 9e-51 Identities = 399/576 (69%), Gaps = 31/576 (5%) Strand=Plus/Plus Query 4 AGTCCGAACAGGGCGA---CAGTCGCTGGGTGTAGACCCGAAACCAA-GTGATCTACCCA 59 |||| ||| ||||||| ||||| | |||||||||||||| |||| |||| || Sbjct 25478 AGTCTGAATAGGGCGAATTCAGTCACGTATAGTAGACCCGAAACCCGTGTGAGCTACTCA 25537 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || ||||| |||||||| |||| || ||||||| ||||||| || | || || Sbjct 25538 TGCCCAGGCTGAAGGTGGGGTACAACCTACTGGAGGGCCGAACCATTTAGAGCTGCAAGT 25597 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 || ||||||| |||| ||||| |||||| ||||| | ||| ||| |||||||||||| Sbjct 25598 CTATTGGATGAGGTGTGAGTAGGAGTGAAAAGCTAATCGAACCGGGAGATAGCTGGTTCT 25657 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTAT 238 | ||||| |||||||||| || | || | ||| ||||||| || ||| || Sbjct 25658 CCGCGAAATATATTTAGGTATAGCGTATTATAGTAACCGAGAGGGGTAGGGCTCTGATAA 25717 Query 239 GGCTAGGGGGTC-ATTGCGACTTACCAAACCATTGCAAACTCCGAATGC-----GCATCA 292 | |||| ||||| ||| ||||||| |||| | | ||||| ||||| | || | Sbjct 25718 GACTAGCGGGTCTATTCCGACTTAGCAAATCTTGATAAACTTCGAATACTCTCGGCGGAA 25777 Query 293 -GTTTTACCG-CGG-GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAA 349 || ||| | ||| ||||| | | |||| || | | | ||| || | Sbjct 25778 TGTAATACAGTCGGACAGTGACG--------GATAAGCGCCATTGTCAAAAGGGAAACAG 25829 Query 350 TCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTG 409 || || | |||||| ||| || | | | || ||| || || || || |||| Sbjct 25830 CCCAGATTCCTGTCTAAGGTCCCCAAGTTATAACTCAGTGGAA--AAGGATGTGCGATTA 25887 Query 410 CTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCT 469 ||| |||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||| Sbjct 25888 CTATGACAGCCAGGATGTTGGCTTAGAAGCAGCCACTCATTTAAAGAGTGCGTAATAGCT 25947 Query 470 CACTAGTCGAGGAGTCGGGCG-TGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAG 528 |||| |||||| | | ||| | | | | | |||| | ||||| | ||||||| | Sbjct 25948 CACTGGTCGAGTGATTGTGCGCCGAAGATTCAGCGGGGCTCAAGTTATACACCGAAGACG 26007 Query 529 TGGGAT---CATTTA--TAT-GATCGGTAGGGGAGC 558 ||| ||||| ||| ||||||||| ||||| Sbjct 26008 GAAGATACATATTTAATTATGGATCGGTAGCGGAGC 26043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689497356800