Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4788 616 5e-174 seq4804 206 9e-51 seq24 122 3e-25 >seq4788 Length=4699 Score = 616 bits (682), Expect = 5e-174 Identities = 470/551 (85%), Gaps = 16/551 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 234 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 293 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 294 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 353 Query 127 GGCCC----GCGAA---GGACCTTAACGCCAGAA---AATGGTCGGTGAAGACCAGTT-- 174 | || |||| || ||| | ||||||| | | || | | | | Sbjct 354 GCACCCGACGCGAGCCGGGTGCTTGAAGCCAGAAGCGAGAGCCCGCTCGGGGCTCGCCTC 413 Query 175 -CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAA 232 |||| ||| | ||||| ||||||||||||| ||||||||||||||| ||| ||| Sbjct 414 CCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGGG 473 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | |||||||||||||||||||||||| ||| |||||| | | |||||||||||||| Sbjct 474 GC--CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGC 531 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 591 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 592 CTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTA 651 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 711 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 771 Query 533 ATCACTTTCTG 543 ||||||||||| Sbjct 772 ATCACTTTCTG 782 >seq4804 Length=1350 Score = 206 bits (228), Expect = 9e-51 Identities = 158/185 (85%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCA 242 ||| |||||||| |||| |||| |||| ||||||||||| ||| ||||| | ||||| Sbjct 1092 TGAATAAGTAAAGAAACAATAACAGTAGAGGTATTTCACTGGCGACCGAA--GTCTCCCT 1149 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||||||||||| | | ||| ||||||| |||||||||||||||||||||||||||| Sbjct 1150 CTTATTCTACACCCGTTATGTCTCTTCACAATGTCGGACTAGAGTCAAGCTCAACAGGGT 1209 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||| |||||| ||||| || ||||||||||||||||||||| ||||||| Sbjct 1210 CTTCTTTCCCCACTGATTTTACCAAGACCCTTCCCTTGGCTGTGGTTTCGCCAGATAGTG 1269 Query 363 GATAG 367 ||||| Sbjct 1270 GATAG 1274 >seq24 Length=2149 Score = 122 bits (134), Expect = 3e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||| |||| | |||| |||||||||||||| Sbjct 172 CTTTTGTTCTACGACAGATTTCTGTTCTGTCTGAGCTCACCTTGGGACACCTGCGTTACA 113 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| ||||||||||||||||||||||||||||| ||||||| |||| ||| |||||| Sbjct 112 ATTTGACAGATGTGCCGCCCCAGCCAAACTCCCCGCCTGACACTGTCTTCAGTGCGGATC 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635100661600