Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2140 376 8e-102 seq5347 293 7e-77 seq3712 143 8e-32 >seq2140 Length=1087 Score = 376 bits (416), Expect = 8e-102 Identities = 403/518 (78%), Gaps = 20/518 (4%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||| | |||||| ||| || ||||| ||||||| ||||| | | |||||||| Sbjct 659 ACTCATTTCGATTACAGTACCTCATAAGAGTTCTGTATCGATATTTGTCTTTACTACCTC 600 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | | | || || ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 599 CTCTCGCCGAGAGTGGGTAAGTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 540 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 539 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTCATAACCATGGTAG 480 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-T 240 || | |||||||||| |||||||||||||||| | || | || || |||||| | Sbjct 479 GCATATCACCTACCATCGTAAGTTGATAGGGCAGACACTTCATGGATCCGTCGCCGACAA 420 Query 241 CAAGGCC--ATGCGATTCGT--TAAGTTATTATGAATCACCAAGGAGCCCCG--AAGGGC 294 ||||||| ||||| || | ||||||| || |||||| | || | ||| | Sbjct 419 CAAGGCCGACTGCGA-TCATACAAAGTTATCCAGAGTCACCACAAACACCAGGCAAGCCC 361 Query 295 -GTTGGTTTTTTATCTAATAAATACACCC-----CTTCCGAAGTCGGGGTTTTTA-GCAT 347 ||| |||| | ||||||||| | | || ||| |||| || || | ||| Sbjct 360 GGTTAGTTTATGATCTAATAAGTGCGGCCATCATCTTACGAA-TCAGGCACACGAGGCAC 302 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| || ||||||| |||||| |||||| ||| || ||| || Sbjct 301 GTATTAGCTCTAGAATTACTACAGTTATCCGTGTAGT-AGGTACGATCCAACGAACCATG 243 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATTGCTTATACTTAGACATGCA 466 ||||||||||||||| || || |||| || | | ||| || | ||| ||||||||| Sbjct 242 GCTGATTTAATGAGCCGTTTGCGGTTTAACCATAACAGA-GGCGTGAACTAAGACATGCA 184 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| ||||||||||||| ||||||||||| Sbjct 183 TGGCTTAATCTTCGAGACAAGCATATAACTACTGGCAG 146 >seq5347 Length=55659 Score = 293 bits (324), Expect = 7e-77 Identities = 329/428 (77%), Gaps = 18/428 (4%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||| | |||||| ||| || ||||| ||||||| ||||| | | |||||||| Sbjct 425 ACTCATTTCGATTACAGTACCTCATAAGAGTTCTGTATCGATATTTGTCTTTACTACCTC 366 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | | | || || ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 365 CTCTCGCCGAGAGTGGGTAAGTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 306 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 305 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTCATAACCATGGTAG 246 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-T 240 || | |||||||||| |||||||||||||||| | || | || || |||||| | Sbjct 245 GCATATCACCTACCATCGTAAGTTGATAGGGCAGACACTTCATGGATCCGTCGCCGACAA 186 Query 241 CAAGGCC--ATGCGATTCGT--TAAGTTATTATGAATCACCAAGGAGCCCCG--AAGGGC 294 ||||||| ||||| || | ||||||| || |||||| | || | ||| | Sbjct 185 CAAGGCCGACTGCGA-TCATACAAAGTTATCCAGAGTCACCACAAACACCAGGCAAGCCC 127 Query 295 -GTTGGTTTTTTATCTAATAAATACACCC-----CTTCCGAAGTCGGGGTTTTTA-GCAT 347 ||| |||| | ||||||||| | | || ||| |||| || || | ||| Sbjct 126 GGTTAGTTTATGATCTAATAAGTGCGGCCATCATCTTACGAA-TCAGGCACACGAGGCAC 68 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| || ||||||| |||||| |||||| ||| || ||| || Sbjct 67 GTATTAGCTCTAGAATTACTACAGTTATCCGTGTAGT-AGGTACGATCCAACGAACCATG 9 Query 408 ACTGATTT 415 ||||||| Sbjct 8 GCTGATTT 1 >seq3712 Length=20446 Score = 143 bits (158), Expect = 8e-32 Identities = 133/164 (81%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||| ||||||||||||||||||| || ||||||| ||||||| ||||| ||| || ||| Sbjct 48 GCACGTATTAGCTCTAGAATTACTACAGTTATCCGTGTAGTA-GGTACGATCCAACGAAC 106 Query 404 GATAACTGATTTAATGAGCCATTC-GCAGTTTCA--CTGTATAGATTGCTTATACTTAGA 460 || ||||||||||||||| || || |||| | | | ||| || | ||| ||| Sbjct 107 CATGGCTGATTTAATGAGCCGTTTTGCGGTTTTAACCATAACAGAG-GCGTGAACTAAGA 165 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 166 CATGCATGGCTTAATCTTCGAGACAAGCATATAACTACTGGCAG 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510308243200