Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gyrodactylus_20salaris_20[genbank_20GCA_5F000715275.1_202014-06-27] 6,075 sequences; 67,380,660 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq976 168 5e-37 seq3112 145 6e-30 >seq976 Length=29826 Score = 168 bits (186), Expect = 5e-37 Identities = 522/799 (65%), Gaps = 14/799 (2%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||||| | || || ||||||||||| || ||||| ||||| | | || || ||| Sbjct 23167 GGAAGGGAGATTGAGGCCAGGTTGCAGACTGCAATCTCATCAGGTGAACTGTATTCTACA 23108 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||| |||||||||||| | || ||||| ||||||| || ||||| ||| | Sbjct 23107 ATTTCTGTGCACAGATTAGAACTACGAATGGTCCCCAAATGTTGCTGATTCGACTTTGAA 23048 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 || || ||||| ||||| | | ||| ||| | || || || | ||| | |||| || Sbjct 23047 TTACAGGCATCTTTGTAGAGAACGTATGGATTACCAGTTTCGATTTGTGCATCAACAATT 22988 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCG-TTCGTAATG 66240 |||| ||| | | || ||||| | || | | ||||| | |||| ||| || || Sbjct 22987 GCGTACCACAACTCCCGAGCCTTGAGTGTCC-TCTTGCCCTTCTTTTGTTCTTCATATTG 22929 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||||| | | ||| | ||||| || | ||| | || || | | ||| Sbjct 22928 AAGATAGAGTTCATTGAACTTTGGTCCCCAGCAATCTGCCAGTCCCGGGCATTCATTTGG 22869 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 ||||| | ||| || |||||| || ||||| ||| |||| ||| |||||||| Sbjct 22868 GTCCATCAATGTCCATTCCTCATCCTTCTCGACACGCTCCATGAATAAATCTGGTATCCA 22809 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 ||||| |||||||| || || |||| || || || |||||| | || || Sbjct 22808 AAGGGCATAGAAGAGGTCACGAGCTCTCACTTCTTCTGCACCAGTATTTTTTCTCATCTC 22749 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 || || || ||||| | |||||||||||| || || ||||| || | || | Sbjct 22748 GACAAAGGAGAAAATGTCCGGATGCCATGGTTCGAGATAAATGGCAAAAGCTCCAGGTCT 22689 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 || || |||||||| || || |||||| || || ||||| | | ||| || | Sbjct 22688 CTTATTACCTCCTTGGTCAACATAACGAGCGGTGTTATTAAAGACTCTGAGCATGGGAAT 22629 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGT 66599 || || || |||| ||||| || || ||| | || | ||| || ||| || Sbjct 22628 GATGCCATTCGATTCACCATTCGTTCCTGAAATGTATGCGCC-AGAGCCGCGAATAGTGT 22570 Query 66600 GAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCC 66659 | ||| | || ||||||||||| || | || ||||| ||||| | | ||| Sbjct 22569 GCACACTGAGGCCAATACCACCAGCATTTTTAGAGATAAGGGCACATTGTTTGAGAGTCT 22510 Query 66660 GGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTG 66717 | ||||||| ||||| ||| | || || || |||||| |||| || || | ||| Sbjct 22509 CGTATATGCCTTCAATACTATCATCATTCATTGTAAGGAGGAAGCAACTGGAC--ATTTG 22452 Query 66718 GGGTTTGGGTGTGGCGGCCGAG---AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || | || || | ||||| ||||||||||| | ||||| || || | | Sbjct 22451 TGGCTGCGGAGT---GCCCGAGTTAAAGAGGGTGGGAGACGCGTGAGTGAACAACTTTTC 22395 Query 66775 AGACATGTAATTGTACGTC 66793 |||||| || ||||| ||| Sbjct 22394 AGACATATACTTGTAGGTC 22376 >seq3112 Length=23135 Score = 145 bits (160), Expect = 6e-30 Identities = 342/513 (67%), Gaps = 15/513 (3%) Strand=Plus/Plus Query 61426 GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGT 61485 |||||| |||||| ||||||||| |||| |||||| | || | | | ||| Sbjct 5290 GTGAAGAAGAAAGCCGATTGGGCCCTCAAATGGATCTCGGATATGAACTCAAACTTTTCC 5349 Query 61486 GAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCA 61545 || || | |||| ||| | | || ||||| |||| ||| ||| || || || || Sbjct 5350 GAGCGGCTAGTGGCCTTTTCCGCCGTAGAGGGCATATTCTTCTCTGGGTCCTTCGCAGCG 5409 Query 61546 ATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATA 61605 || || ||| |||||||||||||||| |||| ||||| ||||| ||||||||| | || Sbjct 5410 ATATTCTGGATGAAGAAACGTGGACTCTTGCCGGGTCTCACCTTTAGCAATGAGCTCATC 5469 Query 61606 TCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTG 61665 || ||||| || ||| | ||| || ||||| | | || || |||| | || | Sbjct 5470 TCTCGCGATGAAGGCCTACATACCGACTTTGCCTGTCTCCTCTTTAAAC---ACATGAAG 5526 Query 61666 AATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAG 61725 || || | | || ||| ||| || ||| || || || || |||||| Sbjct 5527 AACAAACCTACCGTGGCCAAAGTGCATGAAATCGTTGCCGAAGCTGTGCTCATTGAACAG 5586 Query 61726 GAATTTCTGACTGACGCTTTGCCCGTC-----TCACTCATCGGCATGAATTGTGGACTAA 61780 ||||| || |||| ||||| || || || || ||||| || | | Sbjct 5587 GAATTCCT-----ACGCGATGCCCTTCCTTGTAGTCTGATTGGAATGAACTGCAAGTTGA 5641 Query 61781 TGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG-GGTATGAAGCGG 61839 ||| ||||| ||||||||||| ||||| |||||| |||| || || || | | Sbjct 5642 TGTGTCAGTACATTGAATTTGTGGCCGATCGTCTGCTGGTGGAGCTGTCGTGCCCAAAGT 5701 Query 61840 ATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACG 61899 || | || | | ||||| ||||| || ||||| | ||||| ||||| || || || Sbjct 5702 AT-TGGAACTCTACGAACCCCTTTGACTTTATGGAGAATATTTCACTGGAAGGGAAAACA 5760 Query 61900 AATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || |||||||| | |||||| || ||||||||| Sbjct 5761 AACTTTTTCGAAAGACGTGTTGGGGACTATCAA 5793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397538564438000