Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq9530 134 4e-29 >seq9530 Length=1077 Score = 134 bits (148), Expect = 4e-29 Identities = 178/249 (71%), Gaps = 16/249 (6%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCA---AAAGAGCCCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||| ||| || | || ||| || | ||| | ||| | ||||| || Sbjct 474 TACTCATTCCAACTACGAGGTCTCTTTAATGAGTCCCGCATCGATGTTTTTCGTCACCAC 415 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||| |||| ||||| ||| || ||||||| || ||| ||| Sbjct 414 CTCCCCGTACTGGGAACGGGTA-------------CTGTCTCCCTTGGAAGTCGTAACCG 368 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 |||||||| ||||| |||||| || ||||||| |||||||| ||| || | |||| | Sbjct 367 TTTCTCAGACTCCCACTCCGGGATTGAACCCTTATTCCCCGATACTCGCTATCGCCATAG 308 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||| | | | ||||| |||||| ||||||||||||| ||||||| || || ||| || Sbjct 307 TAGACAAGTCACCTACTCTCGAAAATTGATAGGGCAGACATTTGAAGGACCCGTCGACGA 248 Query 239 CTCAAGGCC 247 | ||| ||| Sbjct 247 CGCAAAGCC 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510189903360