Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2517 248 7e-61 seq116 116 3e-21 >seq2517 Length=16602 Score = 248 bits (274), Expect = 7e-61 Identities = 538/794 (68%), Gaps = 11/794 (1%) Strand=Plus/Plus Query 61026 TGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGA 61085 ||| ||||| | || ||||||| | | ||||| | | ||||| | ||| | || Sbjct 11439 TGAGCCCCTCCTTGAACCGAATCCTAGGAGGTTCGTTATCATGCCCATTCAATATCACGA 11498 Query 61086 TATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 ||| ||| | ||||| ||||| | |||||||||||||| || || ||||| ||||| Sbjct 11499 TATCTGGGAATTCTACAAGAAGGCTGTCGCTTCCTTCTGGACCGTTGAAGAGGTTGATTT 11558 Query 61146 GTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAAC 61204 | ||||||| | | ||||||||| | | | || ||| || | || || ||| | Sbjct 11559 GGCCAAAGATCTCACCGACTGGGAGAGACTGAATGA-CGGCGAGCGTCACTTTATTTCCC 11617 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTG--GAACG 61262 | || | || |||||||| || || |||||||||||||| ||| | | |||| Sbjct 11618 ACGTTCTCGCCTTCTTTGCTGCCAGCGATGGTATCGTCAATGAAAATCTCTGCATGAACT 11677 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 | | || || || || |||||| | || || ||||||||||| || | || |||||| | Sbjct 11678 TCT-GC-CAAGAAGTTCAAGTGCCCGAAGCTCGTTGTTTCTATGGTATGCAAATTGCCGT 11735 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||||| ||||||| || ||||| | | |||||||| || ||||| ||||| ||| Sbjct 11736 TGAGAACATCCACTCCGAAATGTATTCTCTCCTCATCGACACTTACATTCAGGAGCCGGC 11795 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 ||||||| | |||||||| || || || | || || ||| ||| || || Sbjct 11796 CAAACGTGATTTCCTCTTCAATGCAATTGAAACCCTTCCCTGTGTCAAGAAGAAGGCCGA 11855 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATT 61502 |||||| | | ||||| | | || |||| | | || || | | || || Sbjct 11856 TTGGGCTCTGAGGTGGATTGCAAATAGGGAAGCTAGCTACGCAGAGCGTGTTGTCGCCTT 11915 Query 61503 TGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAA 61562 || | || || ||||| || ||| ||| || || || ||||||||||| | ||||| Sbjct 11916 CGCTGCTGTTGAAGGTGTCTTCTTCTCTGGTTCATTCGCGTCAATCTTTTGGCTTAAGAA 11975 Query 61563 ACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCAT 61622 ||||| || ||||||||||| || ||||| ||||||||||| || || ||||| | Sbjct 11976 GCGTGGTCTCATGCCCGGTCTCACTTTCAGTAATGAGTTGATTAGCCGAGATGAGGGTTT 12035 Query 61623 GCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGA 61682 ||| |||||| || ||| | ||||||| | ||| || ||| | || || | Sbjct 12036 GCACACTGATTTCGCCTGCTTGATCTTCAAACAC-ATC--GTCAATAGACCATCCCCTCA 12092 Query 61683 GCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGC 61742 |||||| ||||| | ||| | || || || || ||||| || |||||||| Sbjct 12093 GCGTGTCTACGAGATCATGCGTAATGCTGTTGAGATTGAGTGTGAATTCCTTACTGACGC 12152 Query 61743 TTTGCCCGTCTCAC-TCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | ||||| | || | || |||||||| | | | |||| || |||||| || || Sbjct 12153 CCTCCCCGT-TGACTTGATTGGCATGAACTCCCGTTTGATGTGCCAATATATTAGATATG 12211 Query 61802 TTGCCGACCGTCTG 61815 |||| ||||| ||| Sbjct 12212 TTGCTGACCGCCTG 12225 >seq116 Length=136166 Score = 116 bits (128), Expect = 3e-21 Identities = 288/429 (67%), Gaps = 6/429 (1%) Strand=Plus/Minus Query 65113 GGTCCTAAGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGA 65172 ||| | ||| || ||||| || || || || || ||| || ||||||||||| || Sbjct 12557 GGTTCGAAGGTAATACATACCCGTTTTCAGCCCCTTCTTCCACGCGTAGAAATGCATGGA 12498 Query 65173 TGATAAT-TTTGCATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGA 65231 | |||| ||| |||| || ||||| | || | ||| | ||||||||||| || | Sbjct 12497 AG-TAATCTTTCCATAGTTGGGCTCTTTTATGTGGAGATTTAGTGACTGACTCTGGTCAA 12439 Query 65232 TGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTC-CCGATATCTCCCAGACG 65290 || | || |||||||||| || | ||||| || || || || || |||||||| Sbjct 12438 TGAACGGAGCACGATCTGCGGCAAGATCAATAAT-CGTTTTCTGCGGGATTTCCCAGACA 12380 Query 65291 GTCTTGTACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGA 65350 ||||| || ||| || ||| |||||| | | |||| || | ||||| || Sbjct 12379 GTCTTATAAAGGGCCTTTATATCATCTGGAATACCACCTATGTGTTGAATAGAACCCTGA 12320 Query 65351 CGTGCAAT-AATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTG 65409 ||||| | ||| | | | | | ||| ||||| | || | ||| || || | | Sbjct 12319 TTGGCAATGATTGCCAATTTG-AGGGCCTCGGACCAAATGCCAAGATCAATGAGGTCTCT 12261 Query 65410 AACCAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTT 65469 | || |||| ||||| || ||||| || || || || || ||||| | | | || Sbjct 12260 CAACATGTGATTATTGACAACCTGGAAATCTCCAGAGAGAACGCGACGTGAAAACACATT 12201 Query 65470 GGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGG 65529 || ||||||||| ||||| ||||| || |||||||| ||||| |||||||| || Sbjct 12200 ACTGGTAATGGGTTCAGTTGATTCGGTGTTACCGAGAATTTGAGCAGTTGATGCAGTGGG 12141 Query 65530 CATGGGAGC 65538 ||| || || Sbjct 12140 CATTGGTGC 12132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397500601042400