Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq3050 122 1e-22 >seq3050 Length=12077 Score = 122 bits (134), Expect = 1e-22 Identities = 194/275 (71%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 162587 GGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCA 162646 ||||||||||| | ||| ||||| || |||||||| || ||||| || || ||||| Sbjct 3496 GGGAAAGCTATAATATATTTGCCTGTAATGGTATTCTCTTTAATCATGAGAGTCCACGCC 3437 Query 162647 GAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATT-AGTGTGGGA 162705 ||||| |||| || ||||| || || ||| ||| || | ||| |||| | | || | Sbjct 3436 GAGGAAAGACTTTTGTCACTCGTAAAATCACCCGTGCAGTCGCCCAAATTAAATACGGTA 3377 Query 162706 CTCCA-AAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAA 162764 | | |||| | | ||||||| || ||||||||| |||||| ||||| | || | Sbjct 3376 AACAAGAAGT--TATTGAACTTGGTAATCTCAATGCCGAACGTGATTGGGGCTATGCTGA 3319 Query 162765 AGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGAT 162824 |||||| || | || |||||| | ||||| || ||||| |||| | ||||| || || Sbjct 3318 AGACTATGTTTACGCGATGTGGCTTATGCTGCAACAAGATGAGCCTGTTGATTTAGTTAT 3259 Query 162825 CGCAACTGGTGAGCAGTATTCTGTAAAGGACTTTG 162859 || |||| || || | ||||| || |||| Sbjct 3258 TGCCTCTGGCGAAAAGCACAGTGTAAGAGAATTTG 3224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691338972531600