Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq2487 156 6e-36
seq996 156 6e-36
seq142 156 6e-36
seq855 107 3e-21
>seq2487
Length=2226
Score = 156 bits (172), Expect = 6e-36
Identities = 173/223 (78%), Gaps = 12/223 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||||| |
Sbjct 1857 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAATT-C 1914
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117
|||||| | | ||||||| ||| | ||||| ||| ||| ||| || ||
Sbjct 1915 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCATGACGGTGA--TTGACCAGT 1972
Query 118 TTACCCGGACCTGTC-GGCCA--AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174
|||||| | | || ||||| |||| |||||||||| | || ||||||||||
Sbjct 1973 TTACCCAACCTTTTCAGGCCAGAAGGTCT--GACTCGTTGACACCGCCATTGTAGCGCGC 2030
Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2031 GTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 2073
>seq996
Length=24352
Score = 156 bits (172), Expect = 6e-36
Identities = 173/223 (78%), Gaps = 12/223 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||||| |
Sbjct 4370 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAATT-C 4427
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117
|||||| | | ||||||| ||| | ||||| ||| ||| ||| || ||
Sbjct 4428 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCATGACGGTGA--TTGACCAGT 4485
Query 118 TTACCCGGACCTGTC-GGCCA--AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174
|||||| | | || ||||| |||| |||||||||| | || ||||||||||
Sbjct 4486 TTACCCAACCTTTTCAGGCCAGAAGGTCT--GACTCGTTGACACCGCCATTGTAGCGCGC 4543
Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
||||||||| | |||||||||||||||||||||||||||||||
Sbjct 4544 GTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 4586
>seq142
Length=94272
Score = 156 bits (172), Expect = 6e-36
Identities = 173/223 (78%), Gaps = 12/223 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||||| |
Sbjct 92784 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAATT-C 92841
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117
|||||| | | ||||||| ||| | ||||| ||| ||| ||| || ||
Sbjct 92842 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCATGACGGTGA--TTGACCAGT 92899
Query 118 TTACCCGGACCTGTC-GGCCA--AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174
|||||| | | || ||||| |||| |||||||||| | || ||||||||||
Sbjct 92900 TTACCCAACCTTTTCAGGCCAGAAGGTCT--GACTCGTTGACACCGCCATTGTAGCGCGC 92957
Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
||||||||| | |||||||||||||||||||||||||||||||
Sbjct 92958 GTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 93000
>seq855
Length=34863
Score = 107 bits (118), Expect = 3e-21
Identities = 146/196 (74%), Gaps = 12/196 (6%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||| |||
Sbjct 17800 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAA-TTC 17743
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117
|||||| | | ||||||| ||| | ||||| ||| ||| || ||| ||
Sbjct 17742 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCATGACGGTG--ATTGACCAGT 17685
Query 118 TTACCCGGACCTGTC-GGCC--AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174
|||||| | | || |||| ||||| |||||||||| | || ||||||||||
Sbjct 17684 TTACCCAACCTTTTCAGGCCAGAAGGT--CTGACTCGTTGACACCGCCATTGTAGCGCGC 17627
Query 175 GTGCGGCCCAGAACAT 190
||||||||| | ||||
Sbjct 17626 GTGCGGCCCCGGACAT 17611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751973460745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |