Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2487 156 6e-36 seq996 156 6e-36 seq142 156 6e-36 seq855 107 3e-21 >seq2487 Length=2226 Score = 156 bits (172), Expect = 6e-36 Identities = 173/223 (78%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||||| | Sbjct 1857 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAATT-C 1914 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 |||||| | | ||||||| ||| | ||||| ||| ||| ||| || || Sbjct 1915 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCATGACGGTGA--TTGACCAGT 1972 Query 118 TTACCCGGACCTGTC-GGCCA--AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174 |||||| | | || ||||| |||| |||||||||| | || |||||||||| Sbjct 1973 TTACCCAACCTTTTCAGGCCAGAAGGTCT--GACTCGTTGACACCGCCATTGTAGCGCGC 2030 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 2031 GTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 2073 >seq996 Length=24352 Score = 156 bits (172), Expect = 6e-36 Identities = 173/223 (78%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||||| | Sbjct 4370 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAATT-C 4427 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 |||||| | | ||||||| ||| | ||||| ||| ||| ||| || || Sbjct 4428 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCATGACGGTGA--TTGACCAGT 4485 Query 118 TTACCCGGACCTGTC-GGCCA--AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174 |||||| | | || ||||| |||| |||||||||| | || |||||||||| Sbjct 4486 TTACCCAACCTTTTCAGGCCAGAAGGTCT--GACTCGTTGACACCGCCATTGTAGCGCGC 4543 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 4544 GTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 4586 >seq142 Length=94272 Score = 156 bits (172), Expect = 6e-36 Identities = 173/223 (78%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||||| | Sbjct 92784 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAATT-C 92841 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 |||||| | | ||||||| ||| | ||||| ||| ||| ||| || || Sbjct 92842 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCATGACGGTGA--TTGACCAGT 92899 Query 118 TTACCCGGACCTGTC-GGCCA--AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174 |||||| | | || ||||| |||| |||||||||| | || |||||||||| Sbjct 92900 TTACCCAACCTTTTCAGGCCAGAAGGTCT--GACTCGTTGACACCGCCATTGTAGCGCGC 92957 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 92958 GTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 93000 >seq855 Length=34863 Score = 107 bits (118), Expect = 3e-21 Identities = 146/196 (74%), Gaps = 12/196 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||||||||| ||| Sbjct 17800 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACTAGGAA-TTC 17743 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 |||||| | | ||||||| ||| | ||||| ||| ||| || ||| || Sbjct 17742 CTCGTTCACGGGGAACAATTCCAAGCCCCGATCCCTGTCATGACGGTG--ATTGACCAGT 17685 Query 118 TTACCCGGACCTGTC-GGCC--AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174 |||||| | | || |||| ||||| |||||||||| | || |||||||||| Sbjct 17684 TTACCCAACCTTTTCAGGCCAGAAGGT--CTGACTCGTTGACACCGCCATTGTAGCGCGC 17627 Query 175 GTGCGGCCCAGAACAT 190 ||||||||| | |||| Sbjct 17626 GTGCGGCCCCGGACAT 17611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751973460745