Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq996 161 2e-37
seq330 161 2e-37
seq142 161 2e-37
>seq996
Length=24352
Score = 161 bits (178), Expect = 2e-37
Identities = 211/285 (74%), Gaps = 8/285 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97
|||||||||| ||||| | ||| | || || ||||||||||| ||||| |||||
Sbjct 5430 ATGCCCTTCAAAAGGTGTTCATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 5371
Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||| |||||| |||| ||| | || |||||||||||| ||||||||| | |||
Sbjct 5370 TCAAATCAGGCCGACGTTGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 5312
Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213
|||||||| |||||||| | ||| ||| |||||||| || || || || ||||| ||
Sbjct 5311 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 5253
Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273
|||| || ||||||||||||| |||| |||| ||||| ||||||||
Sbjct 5252 TGTATGGCTGCGTTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAAGC 5193
Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||| |||| ||||||||||| || ||| ||||||| || ||
Sbjct 5192 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 5149
>seq330
Length=705
Score = 161 bits (178), Expect = 2e-37
Identities = 211/285 (74%), Gaps = 8/285 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97
|||||||||| ||||| | ||| | || || ||||||||||| ||||| |||||
Sbjct 331 ATGCCCTTCAAAAGGTGTTCATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 272
Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||| |||||| |||| ||| | || |||||||||||| ||||||||| | |||
Sbjct 271 TCAAATCAGGCCGACGTTGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 213
Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213
|||||||| |||||||| | ||| ||| |||||||| || || || || ||||| ||
Sbjct 212 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 154
Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273
|||| || ||||||||||||| |||| |||| ||||| ||||||||
Sbjct 153 TGTATGGCTGCGTTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAAGC 94
Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||| |||| ||||||||||| || ||| ||||||| || ||
Sbjct 93 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 50
>seq142
Length=94272
Score = 161 bits (178), Expect = 2e-37
Identities = 211/285 (74%), Gaps = 8/285 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97
|||||||||| ||||| | ||| | || || ||||||||||| ||||| |||||
Sbjct 93891 ATGCCCTTCAAAAGGTGTTCATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 93832
Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||| |||||| |||| ||| | || |||||||||||| ||||||||| | |||
Sbjct 93831 TCAAATCAGGCCGACGTTGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 93773
Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213
|||||||| |||||||| | ||| ||| |||||||| || || || || ||||| ||
Sbjct 93772 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 93714
Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273
|||| || ||||||||||||| |||| |||| ||||| ||||||||
Sbjct 93713 TGTATGGCTGCGTTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAAGC 93654
Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||| |||| ||||||||||| || ||| ||||||| || ||
Sbjct 93653 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 93610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915166659264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |