Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq996 161 2e-37 seq330 161 2e-37 seq142 161 2e-37 >seq996 Length=24352 Score = 161 bits (178), Expect = 2e-37 Identities = 211/285 (74%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||||| ||||| | ||| | || || ||||||||||| ||||| ||||| Sbjct 5430 ATGCCCTTCAAAAGGTGTTCATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 5371 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| |||| ||| | || |||||||||||| ||||||||| | ||| Sbjct 5370 TCAAATCAGGCCGACGTTGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 5312 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || ||||| || Sbjct 5311 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 5253 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| || ||||||||||||| |||| |||| ||||| |||||||| Sbjct 5252 TGTATGGCTGCGTTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAAGC 5193 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 5192 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 5149 >seq330 Length=705 Score = 161 bits (178), Expect = 2e-37 Identities = 211/285 (74%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||||| ||||| | ||| | || || ||||||||||| ||||| ||||| Sbjct 331 ATGCCCTTCAAAAGGTGTTCATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 272 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| |||| ||| | || |||||||||||| ||||||||| | ||| Sbjct 271 TCAAATCAGGCCGACGTTGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 213 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || ||||| || Sbjct 212 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 154 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| || ||||||||||||| |||| |||| ||||| |||||||| Sbjct 153 TGTATGGCTGCGTTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAAGC 94 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 93 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 50 >seq142 Length=94272 Score = 161 bits (178), Expect = 2e-37 Identities = 211/285 (74%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||||| ||||| | ||| | || || ||||||||||| ||||| ||||| Sbjct 93891 ATGCCCTTCAAAAGGTGTTCATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 93832 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| |||| ||| | || |||||||||||| ||||||||| | ||| Sbjct 93831 TCAAATCAGGCCGACGTTGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 93773 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || ||||| || Sbjct 93772 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 93714 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| || ||||||||||||| |||| |||| ||||| |||||||| Sbjct 93713 TGTATGGCTGCGTTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAAGC 93654 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 93653 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 93610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915166659264