Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq2367 158 5e-36
seq1421 158 5e-36
seq996 158 5e-36
seq855 158 5e-36
seq851 158 5e-36
seq142 158 5e-36
seq779 113 2e-22
seq780 107 8e-21
>seq2367
Length=2544
Score = 158 bits (174), Expect = 5e-36
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| |||||||||||||||||||||||| || |||| |||||
Sbjct 117 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 176
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||
Sbjct 177 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 236
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 237 TGAGTATAGGGGCGA 251
>seq1421
Length=1083
Score = 158 bits (174), Expect = 5e-36
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| |||||||||||||||||||||||| || |||| |||||
Sbjct 756 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 697
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||
Sbjct 696 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 637
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 636 TGAGTATAGGGGCGA 622
>seq996
Length=24352
Score = 158 bits (174), Expect = 5e-36
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| |||||||||||||||||||||||| || |||| |||||
Sbjct 2784 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 2725
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||
Sbjct 2724 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 2665
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 2664 TGAGTATAGGGGCGA 2650
>seq855
Length=34863
Score = 158 bits (174), Expect = 5e-36
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| |||||||||||||||||||||||| || |||| |||||
Sbjct 20638 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 20697
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||
Sbjct 20698 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 20757
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 20758 TGAGTATAGGGGCGA 20772
>seq851
Length=36587
Score = 158 bits (174), Expect = 5e-36
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| |||||||||||||||||||||||| || |||| |||||
Sbjct 3979 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 3920
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||
Sbjct 3919 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 3860
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 3859 TGAGTATAGGGGCGA 3845
>seq142
Length=94272
Score = 158 bits (174), Expect = 5e-36
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| |||||||||||||||||||||||| || |||| |||||
Sbjct 89946 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 89887
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||
Sbjct 89886 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 89827
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 89826 TGAGTATAGGGGCGA 89812
>seq779
Length=16055361
Score = 113 bits (124), Expect = 2e-22
Identities = 86/102 (84%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624
|||| ||||||||||| |||||| ||||||| |||| |||| |||||| |||||||||
Sbjct 481164 GTTGAGACCCGAAAGACGGTGAAGCATGCCTGCGTAGGTTGAAACCAGAGAAAACTCTGG 481105
Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666
||||| || ||| ||||| ||||||||||||||||||||
Sbjct 481104 CGGAGGACCGACGCGATTCTGACGTGCAAATCGATCGTCAAA 481063
>seq780
Length=14665888
Score = 107 bits (118), Expect = 8e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
|| || ||||| |||| |||||||| | | |||| ||||||||| ||||||||||||
Sbjct 12845225 TGAGATCCGAAGGATGTTGAACTATACATACTTAGGTCGAAGCCAGAAGAAACTCTGGTG 12845284
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| || | || ||||| |||||||||| ||||||||| || |||||||| |||
Sbjct 12845285 GAGGACCGTATCGATTCTGACGTGCAAATCAATCGTCAAAAGTGAGTATAGGGACGA 12845341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079921857650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |