Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2367 158 5e-36 seq1421 158 5e-36 seq996 158 5e-36 seq855 158 5e-36 seq851 158 5e-36 seq142 158 5e-36 seq779 113 2e-22 seq780 107 8e-21 >seq2367 Length=2544 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||||||||||||||| || |||| ||||| Sbjct 117 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 176 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 177 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 236 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 237 TGAGTATAGGGGCGA 251 >seq1421 Length=1083 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||||||||||||||| || |||| ||||| Sbjct 756 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 697 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 696 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 637 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 636 TGAGTATAGGGGCGA 622 >seq996 Length=24352 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||||||||||||||| || |||| ||||| Sbjct 2784 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 2725 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 2724 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 2665 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 2664 TGAGTATAGGGGCGA 2650 >seq855 Length=34863 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||||||||||||||| || |||| ||||| Sbjct 20638 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 20697 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 20698 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 20757 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 20758 TGAGTATAGGGGCGA 20772 >seq851 Length=36587 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||||||||||||||| || |||| ||||| Sbjct 3979 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 3920 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 3919 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 3860 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 3859 TGAGTATAGGGGCGA 3845 >seq142 Length=94272 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||||||||||||||| || |||| ||||| Sbjct 89946 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 89887 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 89886 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 89827 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 89826 TGAGTATAGGGGCGA 89812 >seq779 Length=16055361 Score = 113 bits (124), Expect = 2e-22 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| ||||||||||| |||||| ||||||| |||| |||| |||||| ||||||||| Sbjct 481164 GTTGAGACCCGAAAGACGGTGAAGCATGCCTGCGTAGGTTGAAACCAGAGAAAACTCTGG 481105 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 ||||| || ||| ||||| |||||||||||||||||||| Sbjct 481104 CGGAGGACCGACGCGATTCTGACGTGCAAATCGATCGTCAAA 481063 >seq780 Length=14665888 Score = 107 bits (118), Expect = 8e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || || ||||| |||| |||||||| | | |||| ||||||||| |||||||||||| Sbjct 12845225 TGAGATCCGAAGGATGTTGAACTATACATACTTAGGTCGAAGCCAGAAGAAACTCTGGTG 12845284 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || | || ||||| |||||||||| ||||||||| || |||||||| ||| Sbjct 12845285 GAGGACCGTATCGATTCTGACGTGCAAATCAATCGTCAAAAGTGAGTATAGGGACGA 12845341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079921857650