Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq996 167 4e-39 seq142 167 4e-39 seq3367 100 5e-19 seq2487 96.9 6e-18 seq782 75.2 2e-11 >seq996 Length=24352 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 4782 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 4841 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 4842 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTATCAATCTGTC 4898 Score = 96.9 bits (106), Expect = 6e-18 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | ||| || ||||||||||||||||||| | |||||||||||||||||||| Sbjct 4516 ACTCGTTGACACCGCCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 4575 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 4576 CCTGTTATTGC 4586 >seq142 Length=94272 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 93243 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 93302 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 93303 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTATCAATCTGTC 93359 Score = 96.9 bits (106), Expect = 6e-18 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | ||| || ||||||||||||||||||| | |||||||||||||||||||| Sbjct 92930 ACTCGTTGACACCGCCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 92989 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 92990 CCTGTTATTGC 93000 >seq3367 Length=66829 Score = 100 bits (110), Expect = 5e-19 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 |||||||||| ||||||||| ||||||||||||||| |||||| | ||| ||||||||| Sbjct 61795 TCGTTCGTTAGCGGAATTAATCAGACAAATCACTCCTCCAACTGTGGACGACCATGCACC 61736 Query 222 AC-CACCCATAGAATCAAGAAAGAGCTATCAATCT 255 || || |||| ||| |||||||| || |||||| Sbjct 61735 ACACAGCCATCAAATGAAGAAAGACCTGACAATCT 61701 >seq2487 Length=2226 Score = 96.9 bits (106), Expect = 6e-18 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | ||| || ||||||||||||||||||| | |||||||||||||||||||| Sbjct 2003 ACTCGTTGACACCGCCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 2062 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 2063 CCTGTTATTGC 2073 >seq782 Length=7673820 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||||||||||||||||||||||| ||| ||||||||||||| ||| || || || ||| Sbjct 5090318 TTCGTTATCGGAATTAACCAGACAGATCGCTCCACCAACTAAAAACCGCTATTCATCAC 5090260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796771879683