Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq996 167 4e-39
seq142 167 4e-39
seq3367 100 5e-19
seq2487 96.9 6e-18
seq782 75.2 2e-11
>seq996
Length=24352
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4782 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 4841
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 4842 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTATCAATCTGTC 4898
Score = 96.9 bits (106), Expect = 6e-18
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | ||| || ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 4516 ACTCGTTGACACCGCCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 4575
Query 62 CCTGTTATTGC 72
|||||||||||
Sbjct 4576 CCTGTTATTGC 4586
>seq142
Length=94272
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 93243 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 93302
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 93303 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTATCAATCTGTC 93359
Score = 96.9 bits (106), Expect = 6e-18
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | ||| || ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 92930 ACTCGTTGACACCGCCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 92989
Query 62 CCTGTTATTGC 72
|||||||||||
Sbjct 92990 CCTGTTATTGC 93000
>seq3367
Length=66829
Score = 100 bits (110), Expect = 5e-19
Identities = 80/95 (84%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221
|||||||||| ||||||||| ||||||||||||||| |||||| | ||| |||||||||
Sbjct 61795 TCGTTCGTTAGCGGAATTAATCAGACAAATCACTCCTCCAACTGTGGACGACCATGCACC 61736
Query 222 AC-CACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|| || |||| ||| |||||||| || ||||||
Sbjct 61735 ACACAGCCATCAAATGAAGAAAGACCTGACAATCT 61701
>seq2487
Length=2226
Score = 96.9 bits (106), Expect = 6e-18
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | ||| || ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2003 ACTCGTTGACACCGCCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 2062
Query 62 CCTGTTATTGC 72
|||||||||||
Sbjct 2063 CCTGTTATTGC 2073
>seq782
Length=7673820
Score = 75.2 bits (82), Expect = 2e-11
Identities = 52/59 (88%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223
|||||||||||||||||||||||| ||| ||||||||||||| ||| || || || |||
Sbjct 5090318 TTCGTTATCGGAATTAACCAGACAGATCGCTCCACCAACTAAAAACCGCTATTCATCAC 5090260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796771879683
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |