Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq2617 73.4 8e-11 seq996 73.4 8e-11 seq851 73.4 8e-11 >seq2617 Length=1972 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 1644 GACATTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATCGTAACGCAGGTG 1703 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| |||||| ||| | ||| || |||||||| Sbjct 1704 TCCCAAGGTGAGCTCAGCCAGGACAGAAACCTGGCGTAGAGTAAAAGGGCAAAAG 1758 >seq996 Length=24352 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 441 GACATTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATCGTAACGCAGGTG 382 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| |||||| ||| | ||| || |||||||| Sbjct 381 TCCCAAGGTGAGCTCAGCCAGGACAGAAACCTGGCGTAGAGTAAAAGGGCAAAAG 327 >seq851 Length=36587 Score = 73.4 bits (80), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 1636 GACATTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAATCGTAACGCAGGTG 1577 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| |||||| ||| | ||| || |||||||| Sbjct 1576 TCCCAAGGTGAGCTCAGCCAGGACAGAAACCTGGCGTAGAGTAAAAGGGCAAAAG 1522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982364211168