Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq2487 91.5 9e-17
seq996 91.5 9e-17
seq855 91.5 9e-17
seq142 91.5 9e-17
>seq2487
Length=2226
Score = 91.5 bits (100), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|| ||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1817 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1874
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 1875 TAAT-CAGCGCAAGCT 1889
>seq996
Length=24352
Score = 91.5 bits (100), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|| ||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 4330 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 4387
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 4388 TAAT-CAGCGCAAGCT 4402
>seq855
Length=34863
Score = 91.5 bits (100), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|| ||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 17840 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 17783
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 17782 TAAT-CAGCGCAAGCT 17768
>seq142
Length=94272
Score = 91.5 bits (100), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|| ||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 92744 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 92801
Query 109 TAATACAACGCAAGCT 124
|||| || ||||||||
Sbjct 92802 TAAT-CAGCGCAAGCT 92816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300789726740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |