Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq2487 91.5 9e-17 seq996 91.5 9e-17 seq855 91.5 9e-17 seq142 91.5 9e-17 >seq2487 Length=2226 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1817 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1874 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 1875 TAAT-CAGCGCAAGCT 1889 >seq996 Length=24352 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 4330 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 4387 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 4388 TAAT-CAGCGCAAGCT 4402 >seq855 Length=34863 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 17840 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 17783 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 17782 TAAT-CAGCGCAAGCT 17768 >seq142 Length=94272 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 92744 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 92801 Query 109 TAATACAACGCAAGCT 124 |||| || |||||||| Sbjct 92802 TAAT-CAGCGCAAGCT 92816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300789726740