Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq996 75.2 1e-11 seq330 75.2 1e-11 seq142 75.2 1e-11 >seq996 Length=24352 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/104 (77%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGG-- 67 |||||||| |||||| || | ||||||||| |||||||||||| || | ||| || Sbjct 5295 AAACCAACGAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAAACTTTTCAGGCA 5353 Query 68 -CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 ||| ||||| ||||| ||||| ||||| |||| ||||| || Sbjct 5354 ACGTCGGCCTGATTTGAGCACTCAAATTTGTTCAAAGTAAACGT 5397 >seq330 Length=705 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/104 (77%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGG-- 67 |||||||| |||||| || | ||||||||| |||||||||||| || | ||| || Sbjct 196 AAACCAACGAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAAACTTTTCAGGCA 254 Query 68 -CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 ||| ||||| ||||| ||||| ||||| |||| ||||| || Sbjct 255 ACGTCGGCCTGATTTGAGCACTCAAATTTGTTCAAAGTAAACGT 298 >seq142 Length=94272 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/104 (77%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGG-- 67 |||||||| |||||| || | ||||||||| |||||||||||| || | ||| || Sbjct 93756 AAACCAACGAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAAACTTTTCAGGCA 93814 Query 68 -CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 ||| ||||| ||||| ||||| ||||| |||| ||||| || Sbjct 93815 ACGTCGGCCTGATTTGAGCACTCAAATTTGTTCAAAGTAAACGT 93858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595178994462