Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq996 98.7 1e-18 seq330 98.7 1e-18 seq142 98.7 1e-18 >seq996 Length=24352 Score = 98.7 bits (108), Expect = 1e-18 Identities = 131/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | ||||| ||||| | |||| ||| | || Sbjct 5397 ACGTTTACTTTGAACAAATTTGAGTGCTCAAATCAGGCCGACGTTGCCTGAAAAGTTTTG 5338 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 5337 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 5280 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || ||||| || |||| || | ||||||||||| |||| Sbjct 5279 TGATCAAAAGAGACAGGCGGGGACGTTTGTATGGCTGCGTTAGAGGTGAAATTCATGGA 5221 >seq330 Length=705 Score = 98.7 bits (108), Expect = 1e-18 Identities = 131/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | ||||| ||||| | |||| ||| | || Sbjct 298 ACGTTTACTTTGAACAAATTTGAGTGCTCAAATCAGGCCGACGTTGCCTGAAAAGTTTTG 239 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 238 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 181 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || ||||| || |||| || | ||||||||||| |||| Sbjct 180 TGATCAAAAGAGACAGGCGGGGACGTTTGTATGGCTGCGTTAGAGGTGAAATTCATGGA 122 >seq142 Length=94272 Score = 98.7 bits (108), Expect = 1e-18 Identities = 131/179 (73%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | ||||| ||||| | |||| ||| | || Sbjct 93858 ACGTTTACTTTGAACAAATTTGAGTGCTCAAATCAGGCCGACGTTGCCTGAAAAGTTTTG 93799 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 93798 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 93741 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || ||||| || |||| || | ||||||||||| |||| Sbjct 93740 TGATCAAAAGAGACAGGCGGGGACGTTTGTATGGCTGCGTTAGAGGTGAAATTCATGGA 93682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511981930720