Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq2487 190 4e-46
seq996 190 4e-46
seq142 190 4e-46
seq855 132 9e-29
>seq2487
Length=2226
Score = 190 bits (210), Expect = 4e-46
Identities = 204/261 (78%), Gaps = 9/261 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
|||||||||||||| ||| |||||| ||| | ||| |||||||||||||||||
Sbjct 2113 CTTCTTAGAGGGACACGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 2056
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191
||||||||||||| | ||||||||||||||||||| || | | | ||||||| ||| ||
Sbjct 2055 TGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAG-TCA-GAC 1998
Query 192 CT--TGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247
|| ||||| | ||||| ||||||| || || || | | ||| || ||||| | |
Sbjct 1997 CTTCTGGCCTGAAAAGGT-TGGGTAAACTGGTCAATCACCGTCATGACAGGGATCGGGGC 1939
Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307
||| |||| || | | | |||||||||| ||||||||| || ||||| ||| ||| ||
Sbjct 1938 TTGGAATTGTTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTG 1879
Query 308 ATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||
Sbjct 1878 ATTACGTCCCTGCCCTTTGTA 1858
>seq996
Length=24352
Score = 190 bits (210), Expect = 4e-46
Identities = 204/261 (78%), Gaps = 9/261 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
|||||||||||||| ||| |||||| ||| | ||| |||||||||||||||||
Sbjct 4626 CTTCTTAGAGGGACACGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 4569
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191
||||||||||||| | ||||||||||||||||||| || | | | ||||||| ||| ||
Sbjct 4568 TGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAG-TCA-GAC 4511
Query 192 CT--TGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247
|| ||||| | ||||| ||||||| || || || | | ||| || ||||| | |
Sbjct 4510 CTTCTGGCCTGAAAAGGT-TGGGTAAACTGGTCAATCACCGTCATGACAGGGATCGGGGC 4452
Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307
||| |||| || | | | |||||||||| ||||||||| || ||||| ||| ||| ||
Sbjct 4451 TTGGAATTGTTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTG 4392
Query 308 ATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||
Sbjct 4391 ATTACGTCCCTGCCCTTTGTA 4371
>seq142
Length=94272
Score = 190 bits (210), Expect = 4e-46
Identities = 204/261 (78%), Gaps = 9/261 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
|||||||||||||| ||| |||||| ||| | ||| |||||||||||||||||
Sbjct 93040 CTTCTTAGAGGGACACGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 92983
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191
||||||||||||| | ||||||||||||||||||| || | | | ||||||| ||| ||
Sbjct 92982 TGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAG-TCA-GAC 92925
Query 192 CT--TGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247
|| ||||| | ||||| ||||||| || || || | | ||| || ||||| | |
Sbjct 92924 CTTCTGGCCTGAAAAGGT-TGGGTAAACTGGTCAATCACCGTCATGACAGGGATCGGGGC 92866
Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307
||| |||| || | | | |||||||||| ||||||||| || ||||| ||| ||| ||
Sbjct 92865 TTGGAATTGTTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTG 92806
Query 308 ATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||
Sbjct 92805 ATTACGTCCCTGCCCTTTGTA 92785
>seq855
Length=34863
Score = 132 bits (146), Expect = 9e-29
Identities = 148/192 (77%), Gaps = 7/192 (4%)
Strand=Plus/Plus
Query 141 ATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT--GGCC 198
|||| | ||||||||||||||||||| || | | | |||||||| || ||||| ||||
Sbjct 17611 ATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAGT-CAG-ACCTTCTGGCC 17668
Query 199 GGAA--GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256
||| ||| ||||||| || || || | | ||| || ||||| | | ||| ||||
Sbjct 17669 TGAAAAGGT-TGGGTAAACTGGTCAATCACCGTCATGACAGGGATCGGGGCTTGGAATTG 17727
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316
|| | | | |||||||||| ||||||||| || ||||| ||| ||| |||||||||||
Sbjct 17728 TTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTGATTACGTCC 17787
Query 317 CTGCCCTTTGTA 328
||||||||||||
Sbjct 17788 CTGCCCTTTGTA 17799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947165493504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |