Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2487 190 4e-46 seq996 190 4e-46 seq142 190 4e-46 seq855 132 9e-29 >seq2487 Length=2226 Score = 190 bits (210), Expect = 4e-46 Identities = 204/261 (78%), Gaps = 9/261 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| ||| |||||| ||| | ||| ||||||||||||||||| Sbjct 2113 CTTCTTAGAGGGACACGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 2056 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | ||||||||||||||||||| || | | | ||||||| ||| || Sbjct 2055 TGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAG-TCA-GAC 1998 Query 192 CT--TGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 || ||||| | ||||| ||||||| || || || | | ||| || ||||| | | Sbjct 1997 CTTCTGGCCTGAAAAGGT-TGGGTAAACTGGTCAATCACCGTCATGACAGGGATCGGGGC 1939 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||| || | | | |||||||||| ||||||||| || ||||| ||| ||| || Sbjct 1938 TTGGAATTGTTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTG 1879 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 1878 ATTACGTCCCTGCCCTTTGTA 1858 >seq996 Length=24352 Score = 190 bits (210), Expect = 4e-46 Identities = 204/261 (78%), Gaps = 9/261 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| ||| |||||| ||| | ||| ||||||||||||||||| Sbjct 4626 CTTCTTAGAGGGACACGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 4569 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | ||||||||||||||||||| || | | | ||||||| ||| || Sbjct 4568 TGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAG-TCA-GAC 4511 Query 192 CT--TGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 || ||||| | ||||| ||||||| || || || | | ||| || ||||| | | Sbjct 4510 CTTCTGGCCTGAAAAGGT-TGGGTAAACTGGTCAATCACCGTCATGACAGGGATCGGGGC 4452 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||| || | | | |||||||||| ||||||||| || ||||| ||| ||| || Sbjct 4451 TTGGAATTGTTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTG 4392 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 4391 ATTACGTCCCTGCCCTTTGTA 4371 >seq142 Length=94272 Score = 190 bits (210), Expect = 4e-46 Identities = 204/261 (78%), Gaps = 9/261 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| ||| |||||| ||| | ||| ||||||||||||||||| Sbjct 93040 CTTCTTAGAGGGACACGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 92983 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | ||||||||||||||||||| || | | | ||||||| ||| || Sbjct 92982 TGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAG-TCA-GAC 92925 Query 192 CT--TGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 || ||||| | ||||| ||||||| || || || | | ||| || ||||| | | Sbjct 92924 CTTCTGGCCTGAAAAGGT-TGGGTAAACTGGTCAATCACCGTCATGACAGGGATCGGGGC 92866 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||| || | | | |||||||||| ||||||||| || ||||| ||| ||| || Sbjct 92865 TTGGAATTGTTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTG 92806 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 92805 ATTACGTCCCTGCCCTTTGTA 92785 >seq855 Length=34863 Score = 132 bits (146), Expect = 9e-29 Identities = 148/192 (77%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 141 ATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT--GGCC 198 |||| | ||||||||||||||||||| || | | | |||||||| || ||||| |||| Sbjct 17611 ATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAGT-CAG-ACCTTCTGGCC 17668 Query 199 GGAA--GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| ||||||| || || || | | ||| || ||||| | | ||| |||| Sbjct 17669 TGAAAAGGT-TGGGTAAACTGGTCAATCACCGTCATGACAGGGATCGGGGCTTGGAATTG 17727 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || | | | |||||||||| ||||||||| || ||||| ||| ||| ||||||||||| Sbjct 17728 TTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTGATTACGTCC 17787 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 17788 CTGCCCTTTGTA 17799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947165493504