Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1609 91.5 2e-16 seq851 91.5 2e-16 seq262 91.5 2e-16 seq3346 78.8 2e-12 seq865 77.0 5e-12 >seq1609 Length=919 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| || | | || | Sbjct 437 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGATCGGCCAAT 494 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 495 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 548 >seq851 Length=36587 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| || | | || | Sbjct 1169 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGATCGGCCAAT 1112 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 1111 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 1058 >seq262 Length=756 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| || | | || | Sbjct 562 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGATCGGCCAAT 505 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 504 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 451 >seq3346 Length=75384 Score = 78.8 bits (86), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 ||||||||||| || | |||||| | ||||| | || | ||| |||| | || || Sbjct 53204 ACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGACCGGCCAATGG 53147 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||| | ||||| ||||||| ||| |||||| Sbjct 53146 TGCGAAGCTACCATCTGAGGGATTAAGACTGAAAGCCTCTAGGTCTGAATCC 53095 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| || | |||||| | ||||| | |||| || |||| | || | Sbjct 60268 GTACGAGAGGAATTGCAGG-TTCAGAC-ATTTGGTATATGCGCATGGTCGACCGGCCAAT 60211 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| ||||| |||||| ||||| ||||||||||| |||||| Sbjct 60210 GGTGCGAAGCTACTATCTGAGGGATTAAAACTGAAAGCCTCTAAGTCTGAATCC 60157 >seq865 Length=29637 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| || | ||| || | ||||| | || | ||| || | | || | Sbjct 2853 GTACGAGAGGAATTGCAGG-TTCCGAC-ATTTGGTATATGTGCCTGGTCGATCGGCCAAT 2796 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 2795 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC 2742 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| || | ||| || | ||||| | || | ||| |||| | || | Sbjct 7674 GTACGAGAGGAATTGCAGG-TTCCGAC-ATTTGGTATATGTGCCTGGTCGACCGGTCAAT 7617 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||| ||||||| ||| |||||| Sbjct 7616 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAAAGCCTCTAGGTCTGAATCC 7563 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| || | ||| || | ||||| | || | ||| |||| | || | Sbjct 15689 GTACGAGAGGAATTGCAGG-TTCCGAC-ATTTGGTATATGTGCCTGGTCGACCGGTCAAT 15632 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||| | ||||| ||||||| ||| |||||| Sbjct 15631 GGTGCGAAGCTACCATCTGAGGGATTAAGACTGAAAGCCTCTAGGTCTGAATCC 15578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819171089152