Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3220 192 2e-46 seq3121 192 2e-46 seq786 170 6e-40 seq780 134 4e-29 seq809 116 1e-23 seq850 113 1e-22 >seq3220 Length=1212 Score = 192 bits (212), Expect = 2e-46 Identities = 176/220 (80%), Gaps = 12/220 (5%) Strand=Plus/Plus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC---------GAAGTCGGGGTTTT-TAG 344 ||||| || | |||||||| | ||||| |||| | ||| ||| || | | Sbjct 57 GTTGGCTTCTGTTCTAATAAGTGCACCCATTCCCCGACGAGCGGGGTCAGGGCTTCGTGG 116 Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 ||||||||||||||||| ||| || ||||||||| || || ||| ||| ||||||| Sbjct 117 CATGTATTAGCTCTAGAGTTATTACAGTTATCCATTTAACGAG-TACGATCCAATAAACC 175 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||| ||||||||||||||||||||| ||||||| ||||| | || | ||||||||||| Sbjct 176 ATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTATAAAG-GCATGAACTTAGACATG 234 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||| Sbjct 235 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 274 >seq3121 Length=1326 Score = 192 bits (212), Expect = 2e-46 Identities = 176/220 (80%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC---------GAAGTCGGGGTTTT-TAG 344 ||||| || | |||||||| | ||||| |||| | ||| ||| || | | Sbjct 1229 GTTGGCTTCTGTTCTAATAAGTGCACCCATTCCCCGACGAGCGGGGTCAGGGCTTCGTGG 1170 Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 ||||||||||||||||| ||| || ||||||||| || || ||| ||| ||||||| Sbjct 1169 CATGTATTAGCTCTAGAGTTATTACAGTTATCCATTTAACGAG-TACGATCCAATAAACC 1111 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||| ||||||||||||||||||||| ||||||| ||||| | || | ||||||||||| Sbjct 1110 ATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTATAAAG-GCATGAACTTAGACATG 1052 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||| Sbjct 1051 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1012 >seq786 Length=2680382 Score = 170 bits (188), Expect = 6e-40 Identities = 138/163 (85%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 ||| ||||||| ||||| || ||| ||||||||| || || || ||| || ||||| Sbjct 2666837 TAGTATGTATTTGCTCT-GAGTTATTACGGTTATCAATTTAACGAG-TACGTTCCAATAA 2666780 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || ||| ||||||||||||||||||||| ||||||| ||||| | || | |||||||| Sbjct 2666779 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTATAAAG-GCATGAACTTAGAC 2666721 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2666720 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 2666678 >seq780 Length=14665888 Score = 134 bits (148), Expect = 4e-29 Identities = 130/163 (80%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 ||| ||||| | ||||| || ||| || || |||||| | || |||| || ||||| Sbjct 5447902 TAGTATGTACTTGCTCT-GAGTTATTACAGTAATCCATTT-GTCGAGTACGTTCCAATAA 5447845 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || ||| |||||||||||| |||||||| ||||||| |||||| | | | | ||| || Sbjct 5447844 ACCATAGCTGATTTAATGAACCATTCGCGGTTTCACCCTATAGAGTCATGA-ATTTAAAC 5447786 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || |||||||||||||||||||||||||||| |||||||||| Sbjct 5447785 ATACATGGCTTAATCTTTGAGACAAGCATATAGCTACTGGCAG 5447743 >seq809 Length=104149 Score = 116 bits (128), Expect = 1e-23 Identities = 126/163 (77%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 ||| ||||||| ||||| || ||| || ||||||||| | || ||| | ||||| Sbjct 7166 TAGTATGTATTTGCTCT-GAGTTATTACAGTTATCCATTTGACGAG-TACGTCCCAATAA 7109 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || ||| |||||||||||| ||| |||| ||||||| ||| || | | | | ||| || Sbjct 7108 ACCATAGCTGATTTAATGAACCAGTCGCGGTTTCACCCTATGGAGTTATGA-ATTTAAAC 7050 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||| |||||||||||||| | |||||||||| Sbjct 7049 ATACATGGCTTAATTTTTGAGACAAGCATGTAGCTACTGGCAG 7007 >seq850 Length=37171 Score = 113 bits (124), Expect = 1e-22 Identities = 125/163 (77%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 ||| ||||||| ||||| || ||| || ||||||||| | || ||| | ||||| Sbjct 36694 TAGTATGTATTTGCTCT-GAGTTATTACAGTTATCCATTTGACGAG-TACGTCCCAATAA 36751 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 | ||| |||||||||||| ||||||| ||||||| ||| || | | | | ||| || Sbjct 36752 AACATAGCTGATTTAATGAATCATTCGCGGTTTCACCCTATGGAGTCATGA-ATTTAAAC 36810 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||| |||||||||||||| | |||||||||| Sbjct 36811 ATACATGGCTTAATTTTTGAGACAAGCATGTAGCTACTGGCAG 36853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510344976128