Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq3220 192 2e-46
seq3121 192 2e-46
seq786 170 6e-40
seq780 134 4e-29
seq809 116 1e-23
seq850 113 1e-22
>seq3220
Length=1212
Score = 192 bits (212), Expect = 2e-46
Identities = 176/220 (80%), Gaps = 12/220 (5%)
Strand=Plus/Plus
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC---------GAAGTCGGGGTTTT-TAG 344
||||| || | |||||||| | ||||| |||| | ||| ||| || | |
Sbjct 57 GTTGGCTTCTGTTCTAATAAGTGCACCCATTCCCCGACGAGCGGGGTCAGGGCTTCGTGG 116
Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404
||||||||||||||||| ||| || ||||||||| || || ||| ||| |||||||
Sbjct 117 CATGTATTAGCTCTAGAGTTATTACAGTTATCCATTTAACGAG-TACGATCCAATAAACC 175
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
||| ||||||||||||||||||||| ||||||| ||||| | || | |||||||||||
Sbjct 176 ATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTATAAAG-GCATGAACTTAGACATG 234
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 274
>seq3121
Length=1326
Score = 192 bits (212), Expect = 2e-46
Identities = 176/220 (80%), Gaps = 12/220 (5%)
Strand=Plus/Minus
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC---------GAAGTCGGGGTTTT-TAG 344
||||| || | |||||||| | ||||| |||| | ||| ||| || | |
Sbjct 1229 GTTGGCTTCTGTTCTAATAAGTGCACCCATTCCCCGACGAGCGGGGTCAGGGCTTCGTGG 1170
Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404
||||||||||||||||| ||| || ||||||||| || || ||| ||| |||||||
Sbjct 1169 CATGTATTAGCTCTAGAGTTATTACAGTTATCCATTTAACGAG-TACGATCCAATAAACC 1111
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
||| ||||||||||||||||||||| ||||||| ||||| | || | |||||||||||
Sbjct 1110 ATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTATAAAG-GCATGAACTTAGACATG 1052
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1012
>seq786
Length=2680382
Score = 170 bits (188), Expect = 6e-40
Identities = 138/163 (85%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401
||| ||||||| ||||| || ||| ||||||||| || || || ||| || |||||
Sbjct 2666837 TAGTATGTATTTGCTCT-GAGTTATTACGGTTATCAATTTAACGAG-TACGTTCCAATAA 2666780
Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461
|| ||| ||||||||||||||||||||| ||||||| ||||| | || | ||||||||
Sbjct 2666779 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTATAAAG-GCATGAACTTAGAC 2666721
Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666720 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 2666678
>seq780
Length=14665888
Score = 134 bits (148), Expect = 4e-29
Identities = 130/163 (80%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401
||| ||||| | ||||| || ||| || || |||||| | || |||| || |||||
Sbjct 5447902 TAGTATGTACTTGCTCT-GAGTTATTACAGTAATCCATTT-GTCGAGTACGTTCCAATAA 5447845
Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461
|| ||| |||||||||||| |||||||| ||||||| |||||| | | | | ||| ||
Sbjct 5447844 ACCATAGCTGATTTAATGAACCATTCGCGGTTTCACCCTATAGAGTCATGA-ATTTAAAC 5447786
Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|| |||||||||||||||||||||||||||| ||||||||||
Sbjct 5447785 ATACATGGCTTAATCTTTGAGACAAGCATATAGCTACTGGCAG 5447743
>seq809
Length=104149
Score = 116 bits (128), Expect = 1e-23
Identities = 126/163 (77%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401
||| ||||||| ||||| || ||| || ||||||||| | || ||| | |||||
Sbjct 7166 TAGTATGTATTTGCTCT-GAGTTATTACAGTTATCCATTTGACGAG-TACGTCCCAATAA 7109
Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461
|| ||| |||||||||||| ||| |||| ||||||| ||| || | | | | ||| ||
Sbjct 7108 ACCATAGCTGATTTAATGAACCAGTCGCGGTTTCACCCTATGGAGTTATGA-ATTTAAAC 7050
Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|| ||||||||||| |||||||||||||| | ||||||||||
Sbjct 7049 ATACATGGCTTAATTTTTGAGACAAGCATGTAGCTACTGGCAG 7007
>seq850
Length=37171
Score = 113 bits (124), Expect = 1e-22
Identities = 125/163 (77%), Gaps = 3/163 (2%)
Strand=Plus/Plus
Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401
||| ||||||| ||||| || ||| || ||||||||| | || ||| | |||||
Sbjct 36694 TAGTATGTATTTGCTCT-GAGTTATTACAGTTATCCATTTGACGAG-TACGTCCCAATAA 36751
Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461
| ||| |||||||||||| ||||||| ||||||| ||| || | | | | ||| ||
Sbjct 36752 AACATAGCTGATTTAATGAATCATTCGCGGTTTCACCCTATGGAGTCATGA-ATTTAAAC 36810
Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|| ||||||||||| |||||||||||||| | ||||||||||
Sbjct 36811 ATACATGGCTTAATTTTTGAGACAAGCATGTAGCTACTGGCAG 36853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510344976128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |