Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq779 288 8e-73 seq3534 143 2e-29 seq1079 143 2e-29 >seq779 Length=16055361 Score = 288 bits (318), Expect = 8e-73 Identities = 534/775 (69%), Gaps = 13/775 (2%) Strand=Plus/Plus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 ||||| || | || ||| | | ||||| | || | ||||| ||| | ||||| Sbjct 8446165 AATCCCGGTAGGTTTGTAATCATGCCCATTCAATACCACGATATCTGGGAGTTCTACAAG 8446224 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 ||||| | |||||||||||||| ||||||||||| || ||| | ||||| | | |||| Sbjct 8446225 AAGGCTGTGGCTTCCTTCTGGACCGTGGAGGAGGTTGACTTGACGAAAGATCTCACTGAC 8446284 Query 61165 TGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGC 61223 |||||| | | | ||| ||| || | ||||| || || || |||| ||||| || Sbjct 8446285 TGGGAGGGACTGAACGA-CGGGGAGCGTCATTTTATCTCCCACGTTCTGGCTTTCTTCGC 8446343 Query 61224 CGCTTCGGACGGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAA 61281 || ||||||||||| || |||||| | | |||| | | || || ||||| ||| Sbjct 8446344 TGCCAGTGACGGTATCGTGAACGAGAATCTCTGCATGAACTTCT-GC-CAAGAGGTTCAA 8446401 Query 61282 GTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAG 61341 | | || || ||||||||||| || | || |||||| | |||||| ||||||||||| Sbjct 8446402 ATCCCTGAAGCTCGTTGTTTCTATGGGATGCAAATTGCCGTTGAGAATATCCACTCGGAG 8446461 Query 61342 ATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTC 61401 |||||| | ||||| ||||| || | | |||| || | ||||| | ||| Sbjct 8446462 ATGTACTCACTCCTCATTGATACTTATGTGAAAGAGCCTGCCAAGCGTGACTTCCTCTTC 8446521 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 ||||| || ||||| | ||| |||||| ||| |||||||||||| | | |||||| Sbjct 8446522 AATGCGATTGAGACTTTGCCGTGTGTGAAGAAGAAGGCGGATTGGGCCCTGAGGTGGATC 8446581 Query 61462 ACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519 | |||| | || | | || || || | |||| ||||| | || ||||||| Sbjct 8446582 GGGA--ACAAAGACGCGTCGTATGCGGAGCGTGTTGTGGCGTTTGCAGCTGTAGAGGGTG 8446639 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 |||| ||| || || || ||| ||||||| ||| ||||||| ||||| | ||||| | Sbjct 8446640 TATTCTTCTCGGGTTCATTCGCCTCAATCTTCTGGCTGAAGAAGCGTGGTTTAATGCCTG 8446699 Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTG 61639 |||| || ||||| ||||||||||| ||||| ||||| ||||| |||||| || Sbjct 8446700 GTCTCACTTTCAGTAATGAGTTGATTAGCCGCGATGAGGGTCTGCATACTGATTTCGCGT 8446759 Query 61640 TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTG 61699 ||| | ||||| | | | ||||| ||||||| ||||||| ||||| Sbjct 8446760 GCTTGATCTTCAAGC---ACGTAGTGAACAAGCCGTCGGCTAAGCGTGTCTACGAGATCA 8446816 Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 | ||||| || || || || ||||| || ||||| ||| | ||||| | | Sbjct 8446817 TGCGTGATGCAGTTGAGATTGAGTGCGAATTCCTCACTGAAGCTCTTCCCGTTGATTTGA 8446876 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 | |||||||| ||| | | |||| || || ||| |||||| || ||||| || Sbjct 8446877 TAGGCATGAACTGTCGTTTGATGTGCCAATACATTAGATTTGTCGCTGACCGCCT 8446931 >seq3534 Length=36356 Score = 143 bits (158), Expect = 2e-29 Identities = 286/416 (69%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 65120 AGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAAT 65179 || |||||||| || ||||| || || | ||| || ||||||||||| || | | Sbjct 21753 AGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATC 21812 Query 65180 TTTGCATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA 65239 ||| |||| || ||||| | || | ||||| || ||||||||||| ||| || || Sbjct 21813 TTTCCATAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGA 21872 Query 65240 CCACGATCTGCAGCCATGTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTA 65298 ||||||||||||| | ||||| || || || | |||||||| || ||| | || Sbjct 21873 GCACGATCTGCAGCAAGATCAATAAT-CGTTTTCTGTGGAATCTCCCACACAGTCCTATA 21931 Query 65299 CAG-GCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAA 65357 ||| || | | ||| |||||| | || |||| || | ||||| | |||| Sbjct 21932 CAGAGCCTTG-ATATCATCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAA 21990 Query 65358 TAA-TGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAG 65416 ||| ||| | | | | | ||| ||||| | ||||| |||||| || | | | || | Sbjct 21991 TAATTGCCAATTTG-AGGGCCTCAGACCAGATACCCAGATCGATGAGGTCTCTCAACATG 22049 Query 65417 TGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTG 65476 || | ||||| | ||||| || || || || |||||||| | | | || ||| Sbjct 22050 TGGCTATTGACAATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTA 22109 Query 65477 ATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||||||||| || |||||||| || || ||||| ||||| |||||||| ||||| Sbjct 22110 ATGGGTTCAGTTGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCAT 22165 >seq1079 Length=19334 Score = 143 bits (158), Expect = 2e-29 Identities = 286/416 (69%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 65120 AGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAAT 65179 || |||||||| || ||||| || || | ||| || ||||||||||| || | | Sbjct 7124 AGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATC 7065 Query 65180 TTTGCATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA 65239 ||| |||| || ||||| | || | ||||| || ||||||||||| ||| || || Sbjct 7064 TTTCCATAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGA 7005 Query 65240 CCACGATCTGCAGCCATGTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTA 65298 ||||||||||||| | ||||| || || || | |||||||| || ||| | || Sbjct 7004 GCACGATCTGCAGCAAGATCAATAAT-CGTTTTCTGTGGAATCTCCCACACAGTCCTATA 6946 Query 65299 CAG-GCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAA 65357 ||| || | | ||| |||||| | || |||| || | ||||| | |||| Sbjct 6945 CAGAGCCTTG-ATATCATCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAA 6887 Query 65358 TAA-TGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAG 65416 ||| ||| | | | | | ||| ||||| | ||||| |||||| || | | | || | Sbjct 6886 TAATTGCCAATTTG-AGGGCCTCAGACCAGATACCCAGATCGATGAGGTCTCTCAACATG 6828 Query 65417 TGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTG 65476 || | ||||| | ||||| || || || || |||||||| | | | || ||| Sbjct 6827 TGGCTATTGACAATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTA 6768 Query 65477 ATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||||||||| || |||||||| || || ||||| ||||| |||||||| ||||| Sbjct 6767 ATGGGTTCAGTTGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCAT 6712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397550348353520