Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq779 120 4e-22 >seq779 Length=16055361 Score = 120 bits (132), Expect = 4e-22 Identities = 201/291 (69%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 162550 GCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCC 162609 ||||| || |||| | ||||| | ||| || | ||||||||| | || ||| Sbjct 11473938 GCTAAGCTCTATGCCTATTGGATTGTTGTAAATTATCGAGAAAGCTATAATATGTTCGCC 11473997 Query 162610 TCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGC 162669 | || |||||||| || |||||||| || ||||| ||||||||||||| ||||| ||| Sbjct 11473998 TGTAATGGTATTCTCTTTAATCACGAGAGTCCACGCCGAGGAGAGACGTTTGTCACTCGC 11474057 Query 162670 AAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGA 162729 || ||| ||| || | | ||||||| || ||| | | | ||||||| Sbjct 11474058 AAAATCACCCGTGCAGTCGCTCGAATTAAACACGGCAAGCAAGAAGTTGTTGAACTTGGT 11474117 Query 162730 AACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTG 162789 || |||||||| |||||| ||||| | || |||||| || | ||||||||| | Sbjct 11474118 AATCTCAATGCTGAACGTGATTGGGGCTATGCTGGAGACTATGTTTATGCTATGTGGCTT 11474177 Query 162790 ATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAGCAG 162840 ||||| || ||||| | || | ||| | || || || |||||||| || Sbjct 11474178 ATGCTACAACAAGACGAACCCGTTGACTTAGTAATTGCCTCTGGTGAGAAG 11474228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691427712676680