Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10293 147 4e-33 seq7720 147 4e-33 >seq10293 Length=3591 Score = 147 bits (162), Expect = 4e-33 Identities = 208/285 (73%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||| | ||||| | ||| | || || ||||||||||| ||||| ||||| Sbjct 2098 ATGCCCTTTAAAAGGTGTTCATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 2157 Query 98 TCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| || | ||| | || |||||||||||| ||||||||| | ||| Sbjct 2158 TCAAATCAGGCCGATGTCGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 2216 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || ||||| || Sbjct 2217 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 2275 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | ||||||||||||| |||| |||| ||||| |||||||| Sbjct 2276 TGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAAGC 2335 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 2336 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 2379 >seq7720 Length=6042 Score = 147 bits (162), Expect = 4e-33 Identities = 208/285 (73%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG-ACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||| | ||||| | ||| | || || ||||||||||| ||||| ||||| Sbjct 51 ATGCCCTTTAAAAGGTGTTCATGGGCGGATGGCACGTTTACTTTGAACAAATTTGAGTGC 110 Query 98 TCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| || | ||| | || |||||||||||| ||||||||| | ||| Sbjct 111 TCAAATCAGGCCGATGTCGCCTGAAAAGTTTTGCATGGAATAATGGAATAGGACTT-CGG 169 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| |||||||| | ||| ||| |||||||| || || || || ||||| || Sbjct 170 TTCTATTTCGTTGGTTT-TCGGATCCGAAGTAATGATCAAAAGAGACAGGCGGGGACGTT 228 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| | ||||||||||||| |||| |||| ||||| |||||||| Sbjct 229 TGTATGGCTGCGCTAGAGGTGAAATTCATGGACCGTAGCCAGACAAACTAAAGCGAAAGC 288 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||| ||||||||||| || ||| ||||||| || || Sbjct 289 ATTCGTCAAGCATGTTTTCATTGGCCA-TGAGCGAAAGTCAGAGG 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915051627776