Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq7720 158 5e-36 seq2861 136 2e-29 >seq7720 Length=6042 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||||||||||||||| || |||| ||||| Sbjct 4042 GAGCATGAGCACACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGTAGGTTGAAG 4101 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 4102 CCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACG 4161 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 4162 TGAGTATAGGGGCGA 4176 >seq2861 Length=17419 Score = 136 bits (150), Expect = 2e-29 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||| ||||||||||| || ||| ||||| Sbjct 14821 GAGCATGAGCACACACGTTGAGACCCGAAAGATAGTGAACTATGCTTGCGTAGATTGAAG 14762 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||||||||| ||||| || |||| ||||| ||| |||||||||||||||| Sbjct 14761 CCAGAGGAAACTCTGATGGAGAACCGTAGCGATTCTGACGTACAAATCGATCGTCAAACG 14702 Query 669 TGGGTATAGGGGCGA 683 ||||||||||| ||| Sbjct 14701 TGGGTATAGGGACGA 14687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079652252600