Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10293 167 4e-39 seq7720 167 4e-39 seq978 129 9e-28 seq2367 75.2 2e-11 >seq10293 Length=3591 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 2746 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 2687 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 2686 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTATCAATCTGTC 2630 Score = 96.9 bits (106), Expect = 6e-18 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | ||| || ||||||||||||||||||| | |||||||||||||||||||| Sbjct 3060 ACTCGTTGACACCGCCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 3001 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 3000 CCTGTTATTGC 2990 >seq7720 Length=6042 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 699 CTAATTAGCAGGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 640 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 639 ACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAGCTATCAATCTGTC 583 Score = 96.9 bits (106), Expect = 6e-18 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | ||| || ||||||||||||||||||| | |||||||||||||||||||| Sbjct 1013 ACTCGTTGACACCGCCATTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGA 954 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 953 CCTGTTATTGC 943 >seq978 Length=31418 Score = 129 bits (142), Expect = 9e-28 Identities = 89/101 (88%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 ||| | |||||||||| |||||||||||||||||| || | |||||||||| ||||||| Sbjct 4487 GGTTTAGTTCGTTATCAGAATTAACCAGACAAATCGCTTTATCAACTAAGAATGGCCATG 4428 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||||||||||||||||||||||| Sbjct 4427 CACCACCAACCACCAAATCAAGAAAGAGCTATCAATCTGTC 4387 >seq2367 Length=19867 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| ||| ||||||||||||||| ||||| ||||| |||| | |||||||||| |||| Sbjct 7536 ATCGCTCTACCAACTAAGAACGGATATGCATCACCAACCATCCAGTCAAGAAAGAACTAT 7595 Query 250 CAATCTGTC 258 ||||| ||| Sbjct 7596 CAATCAGTC 7604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796674859572