Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5682 360 3e-97 seq6955 132 8e-29 >seq5682 Length=9222 Score = 360 bits (398), Expect = 3e-97 Identities = 242/270 (90%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 523 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 464 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 463 TAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGAC 404 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 403 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 344 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA----GGGA----CTAAAGGAT 263 |||||||||||||||| ||||||| || ||||| | || ||| | ||||||| Sbjct 343 TGTGGTAACTTTTCTGACACCTCTTGCTTCAAACTCTGAATATCGGATCATCAAAAGGAT 284 Query 264 CGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||| |||||| ||| ||||||| Sbjct 283 CGATAGGCCACGCTTTCACGGTCTGTATTC 254 >seq6955 Length=7115 Score = 132 bits (146), Expect = 8e-29 Identities = 171/237 (72%), Gaps = 37/237 (16%) Strand=Plus/Plus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 ||| | |||||| ||| |||| |||||||||||| ||||||||||||||| ||||||||| Sbjct 5048 TCTTACGACGGTGTAAGCCCAACTCACGTTCCCTGTTAGTGGGTGAACAAACCAACGCTT 5107 Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGA---GCCGACATCGAAGGATCAAAAAGCAAC 172 ||||||| ||| ||| |||||||| |||||||| | ||||| |||| || || Sbjct 5108 GGTGAATTCTTCTTTATAATGGTAGGAAGAAGCGCCGACATTG-AGGAT-AAAAGGCGAC 5165 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 ||||| |||| |||||||||||||||||||||| |||| Sbjct 5166 GTCGC-------------CTGC-----------TATCCCTGTGGTAACTTTTCTGACACC 5201 Query 233 TCTAGCCTCAAATT-------TCGAGGGACTAAA-GGATCGATAGGCCACACTTTCA 281 ||| || |||| | |||| ||| ||| ||||| ||||||||| |||||| Sbjct 5202 TCTTGCTACAAACTCTGAAAATCGAATGACCAAATGGATCTATAGGCCACTCTTTCA 5258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854261484672