Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq10293 89.7 5e-16 seq7720 89.7 5e-16 >seq10293 Length=3591 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | ||||| |||||| | || ||| | || Sbjct 2131 ACGTTTACTTTGAACAAATTTGAGTGCTCAAATCAGGCCGATGTCGCCTGAAAAGTTTTG 2190 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 2191 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 2248 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || ||||| || |||| | | ||||||||||| |||| Sbjct 2249 TGATCAAAAGAGACAGGCGGGGACGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGA 2307 >seq7720 Length=6042 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | ||||| |||||| | || ||| | || Sbjct 84 ACGTTTACTTTGAACAAATTTGAGTGCTCAAATCAGGCCGATGTCGCCTGAAAAGTTTTG 143 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 144 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 201 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || || ||||| || |||| | | ||||||||||| |||| Sbjct 202 TGATCAAAAGAGACAGGCGGGGACGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511919588480