Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10293 187 5e-45 seq7720 187 5e-45 >seq10293 Length=3591 Score = 187 bits (206), Expect = 5e-45 Identities = 203/261 (78%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| ||| |||||| ||| | ||| ||||||||||||||||| Sbjct 2950 CTTCTTAGAGGGACACGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 3007 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | ||||||||||||||||||| || | | | ||||||| ||| || Sbjct 3008 TGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAG-TCA-GAC 3065 Query 192 CT--TGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 || ||||| | ||||| |||| || || || || | | ||| || ||||| | | Sbjct 3066 CTTCTGGCCTGAAAAGGT-TGGGCAAACTGGTCAATCACCGTCATGACAGGGATCGGGGC 3124 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||| || | | | |||||||||| ||||||||| || ||||| ||| ||| || Sbjct 3125 TTGGAATTGTTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTG 3184 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 3185 ATTACGTCCCTGCCCTTTGTA 3205 >seq7720 Length=6042 Score = 187 bits (206), Expect = 5e-45 Identities = 203/261 (78%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| ||| |||||| ||| | ||| ||||||||||||||||| Sbjct 903 CTTCTTAGAGGGACACGCGGGAGAAGCCGCACGAAATA-GAG-CAATAACAGGTCTGTGA 960 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | ||||||||||||||||||| || | | | ||||||| ||| || Sbjct 961 TGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACAATGGCGGTGTCAACGAG-TCA-GAC 1018 Query 192 CT--TGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 || ||||| | ||||| |||| || || || || | | ||| || ||||| | | Sbjct 1019 CTTCTGGCCTGAAAAGGT-TGGGCAAACTGGTCAATCACCGTCATGACAGGGATCGGGGC 1077 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||| || | | | |||||||||| ||||||||| || ||||| ||| ||| || Sbjct 1078 TTGGAATTGTTCCCCGTGAACGAGGAATTCCTAGTAAGTGCAAGTCATAAGCTTGCGCTG 1137 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 1138 ATTACGTCCCTGCCCTTTGTA 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947046439936