Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7720 470 5e-130 seq6955 136 1e-29 seq5682 111 5e-22 >seq7720 Length=6042 Score = 470 bits (520), Expect = 5e-130 Identities = 268/273 (98%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6034 CATGTCTCTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 5975 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 5974 TTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGA 5915 Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5914 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 5855 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5854 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 5795 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||||| Sbjct 5794 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 5762 >seq6955 Length=7115 Score = 136 bits (150), Expect = 1e-29 Identities = 127/158 (80%), Gaps = 9/158 (6%) Strand=Plus/Plus Query 267 TTCACAAAGTCG---GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG 323 ||||| |||||| || || |||||| ||| |||||||||||||| ||| ||||||| | Sbjct 5673 TTCACTAAGTCGTGGGATTACAGTCAATCTCCACAGGGTCTTCTTTTCCCCCTGATTCTG 5732 Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG--GGACAGTG---GGA 378 |||| |||||| |||||||||||||||| |||| |||||||||| || |||| | | Sbjct 5733 CCAAACCCGTTGCCTTGGCTGTGGTTTCACTAGGTAGTAGATAGTTTGA-AGTGGTAGTA 5791 Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||| | | ||||||| ||| | |||||||| || || Sbjct 5792 ATCTCCTCACTCCATTCCTGCACATCACTAATCAGTTG 5829 Score = 93.3 bits (102), Expect = 1e-16 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| || ||||||| || | || | |||| || ||||||||||| | Sbjct 5269 CTTTTACTCTACGCCAGGTTTCTGTCCTGGCTAAGCTCACCTTGGGTCACCTGCGTTACG 5328 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||| |||||||| ||||||||| | ||||||||||||| |||||| Sbjct 5329 ATTTGACAGATGTACCGCCCCAGTCCAACTCCCCACCTGGCAATGT 5374 >seq5682 Length=9222 Score = 111 bits (122), Expect = 5e-22 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| || ||||||| || |||| | |||| |||||||||||||| | Sbjct 220 CTTTTACTCTACGCCAGGTTTCTGTCCTGGCTGAGCTCACCTTGGGACACCTGCGTTACG 161 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 ||| |||||||| ||||||||| |||||||||| |||||||||||| ||| Sbjct 160 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCTTCA 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634934901376