Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10293 387 4e-105 >seq10293 Length=3591 Score = 387 bits (428), Expect = 4e-105 Identities = 422/561 (75%), Gaps = 61/561 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACA-AGACCC--AAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| ||||| || | | ||| ||| || | ||| |||||| | ||||| ||| Sbjct 1700 ACTCATTCCGATTACGGAGCCTCGTAAATGAGTCCCGCATCGGTATTTTTCGTCACCACC 1641 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 1640 TCCCCGTACCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTCCCTTGGAAGTGGTAGCCGT 1581 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1580 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTATCACCATGGT 1521 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||||||||||||||||| ||||||| || || |||||| | Sbjct 1520 AGGCAGGTCACCTACCATCGAAAGTTGATAGGGCAGACATTTGAAGGACCCGTCGCCGAC 1461 Query 240 TCAAGGCC--ATGCGATTCGTTA-AGTTATTATGAATCACCA-AGGAGC----------- 284 || ||| |||||| || | | |||| || |||||| | | || Sbjct 1460 GTAAAGCCGACTGCGATCTGTAACAATTATCCAGAGTCACCAGAAGTGCTGCAGCCCGCG 1401 Query 285 ---------CCCGAAGG-------GC------------GTTGGTTTTTTATCTAATAAAT 316 |||||||| || ||||| || | |||||||| | Sbjct 1400 CACACACCTCCCGAAGGAGGGAATGCACGCGGAGACTGGTTGGCTTCTGTTCTAATAAGT 1341 Query 317 ACACCCCTTCC-----GAAGTC--------GGGGTTTTTAGCATGTATTAGCTCTAGAAT 363 ||||| |||| | || | ||| || | |||||||||||||||||| | Sbjct 1340 GCACCCATTCCCCGAGGGAGCCCGGGGTCAGGGCTTCGTGGCATGTATTAGCTCTAGAGT 1281 Query 364 TACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCC 423 || || ||||||||| || | ||| ||| ||||||| ||| ||||||||||||||| Sbjct 1280 TATTACAGTTATCCATTTAACGA-GTATGATCCAATAAACCATAGCTGATTTAATGAGCC 1222 Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 |||||| ||||||| ||||| | || | |||||||||||||||||||||||||||||| Sbjct 1221 ATTCGCGGTTTCACCGTATA-AAGGCATGAACTTAGACATGCATGGCTTAATCTTTGAGA 1163 Query 484 CAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| Sbjct 1162 CAAGCATATGACTACTGGCAG 1142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510155133952