Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 289 2e-73 seq1443 161 8e-35 >seq2 Length=118199 Score = 289 bits (320), Expect = 2e-73 Identities = 551/799 (69%), Gaps = 17/799 (2%) Strand=Plus/Minus Query 61023 CAATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGA 61082 || ||||||||| | | ||| || || | || || || | |||||| | || | Sbjct 63800 CATTGAACCCCTCCTTGAGCCGAACCCCAGTAGGTTTGTTGTGATGCCCATCCAATACCA 63741 Query 61083 GGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGA 61142 ||||| ||| | ||||| ||||| | |||||||||||||| ||||||||||| || Sbjct 63740 CGATATATGGGAGTTCTACAAGAAGGCAGTGGCTTCCTTCTGGACCGTGGAGGAGGTTGA 63681 Query 61143 TTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTA 61201 ||| | ||||| | | |||||||||| | | | || ||||| | || || || Sbjct 63680 CTTGACGAAAGATCTCACTGACTGGGAGAGACTGAATGAT-GGTGAGCGTCACTTTATCT 63622 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTG--GA 61259 || ||| |||| ||||| || || ||||| || || || |||||||| | || Sbjct 63621 CCCACGTGCTGGCTTTCTTCGCAGCCAGTGACGGAATTGTGAACGAGAATTTGTGCATGA 63562 Query 61260 ACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGC 61319 || | | || || ||||| ||| | |||| || ||||||||||| || | || ||||| Sbjct 63561 ACTTCT-GC-CAAGAGGTTCAAATTCCGGAAGCTCGTTGTTTCTATGGGATGCAAATTGC 63504 Query 61320 CATGGAGAATGTCCACTCGGAGATGTA--CAGTGTTCTCATCGATACGTACATCAGGGAG 61377 | ||||| |||||||||||||||| || || ||||||||||| ||| | | ||| Sbjct 63503 AGTAGAGAACATCCACTCGGAGATGTATTCACTG--CTCATCGATACCTACGTGAAAGAG 63446 Query 61378 CGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA 61437 | ||| | ||||| | |||||||| || ||||| | || |||||| ||| Sbjct 63445 CCGGCCAAGCGTGATTTTCTCTTCAATGCGATTGAGACTCTGCCATGTGTGAAGAAGAAG 63386 Query 61438 GCGGATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGC 61495 ||||||||||| | | |||||| | | |||| | || || | || || || | Sbjct 63385 GCGGATTGGGCACTGAGGTGGATCGCGA--ACAAAGACGCGACGTATGCGGAGCGTGTTA 63328 Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555 |||| ||||| | || ||||| || || ||| || || || ||| | ||||| |||| Sbjct 63327 TGGCGTTTGCTGCAGTGGAGGGGGTTTTCTTCTCGGGTTCATTCGCCTCGATCTTCTGGT 63268 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACG 61615 ||||||| ||||| || ||||| ||||| |||||||| || |||||||| || |||| Sbjct 63267 TGAAGAAGCGTGGCCTAATGCCGGGTCTCACCTTCAGTAACGAGTTGATTAGCCGTGACG 63208 Query 61616 AGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGT 61675 |||| |||| ||||| || | || | ||||| | | ||| ||||| |||| Sbjct 63207 AGGGTCTGCACACAGATTTCGCCTGTCTGATTTTCAAGCAC-ATC--GTGAACAAGCCGT 63151 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 ||| ||||||| |||||| | ||||| || || || || ||||| || | Sbjct 63150 CGGCTAAGCGTGTCCATGAGATCATGCGTGATGCTGTTGAGATTGAGTGTGAATTCCTCA 63091 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 |||||||| | ||||| | || |||||||| ||| || | |||| ||||| || Sbjct 63090 CTGACGCTCTTCCCGTTGATTTGATTGGCATGAACTGTCGATTGATGTGCCAGTACATAA 63031 Query 61796 AATTTGTTGCCGACCGTCT 61814 || ||| || ||||| || Sbjct 63030 GATATGTGGCTGACCGCCT 63012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 193/282 (68%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 61023 CAATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGA 61082 || ||||||||| | | ||| || || | || || || | |||||| | || | Sbjct 73303 CATTGAACCCCTCCTTGAGCCGAACCCCAGTAGGTTTGTTGTGATGCCCATCCAATACCA 73244 Query 61083 GGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGA 61142 ||||| ||| | ||||| ||||| | |||||||||||||| ||||||||||| || Sbjct 73243 CGATATATGGGAGTTCTACAAGAAGGCAGTGGCTTCCTTCTGGACCGTGGAGGAGGTTGA 73184 Query 61143 TTTGTCCAAAGACATGAATGACTGGGAGCG-TTTATCGAGCGGTGAACAACATTTCATTA 61201 ||| | ||||| | | |||||||||| | | | || ||||| | || || || Sbjct 73183 CTTGACGAAAGATCTCACTGACTGGGAGAGACTGAATGA-TGGTGAGCGTCACTTTATCT 73125 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTAT--TGGA 61259 || ||| |||| ||||| || || ||||| || || || |||||||| | || Sbjct 73124 CCCACGTGCTGGCTTTCTTCGCAGCCAGTGACGGAATTGTGAACGAGAATTTGTGCATGA 73065 Query 61260 ACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTT 61301 || ||| || ||||| ||| | |||| || |||||||| Sbjct 73064 AC--TTCTGCCAAGAGGTTCAAATTCCGGAAGCTCGTTGTTT 73025 >seq1443 Length=26160 Score = 161 bits (178), Expect = 8e-35 Identities = 290/416 (70%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 65120 AGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAAT 65179 || |||||||| || ||||| || || ||| |||||||||||||| || | | Sbjct 12199 AGGTAGTACATTCCAGTCTTCAGTCCCTTCTTCCACGCATAGAAATGCATGGAAGTGATC 12258 Query 65180 TTTGCATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA 65239 || |||| || || || || || | ||||||||||||||||||||| ||| || || Sbjct 12259 TTACCATAGTTGGGTTCCTTCATGTGGAGATTCAACGACTGACTCTGATCTATGAAAGGA 12318 Query 65240 CCACGATCTGCAGCCATGTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTA 65298 ||||||||||||| | ||||| || || || | ||||||||||| |||||||| Sbjct 12319 GCACGATCTGCAGCTAGATCAATAAT-CGTTTTCTGTGGAATCTCCCAGACAGTCTTGTA 12377 Query 65299 CAGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAA 65357 || || | | | || |||||| | || |||| ||| | ||||| || |||| Sbjct 12378 CA-ACGCCTTAATATCGTCTGGAATGCCGTCGATGTGCTGAATAGAACCCTGATTGGCAA 12436 Query 65358 -TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAG 65416 || ||| | | | | | ||| ||||| | ||||||||||| || | | | || | Sbjct 12437 TTATTGCCAATTTG-AGGGCCTCAGACCAAATGCCCAAATCGATGAGGTCTCTCAACATG 12495 Query 65417 TGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTG 65476 || | ||||| | ||||| || || || || |||||||| | | | || ||| Sbjct 12496 TGGCTATTGACAATCTGGAAATCTCCAGAAAGAACACGACGCGAAAATACATTACTCGTA 12555 Query 65477 ATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||||||||| || || ||||| || || ||||| ||||| |||||||| ||||| Sbjct 12556 ATGGGTTCAGTTGACTCGGTGTTTCCCAGGATTTGAGCAGTTGATGCAGTGGGCAT 12611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 204/300 (68%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 66339 GCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAA 66398 |||| || |||||||| |||||||| || ||||||||| | || || |||||| Sbjct 13651 GCATGAAAAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTCTAGCACGAATCTCCTCGG 13710 Query 66399 TGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGG 66457 || ||| ||| | |||| || | ||||| |||| || | |||||| ||||| || Sbjct 13711 CCCCAGTG-TTTCTACGCAGCTCTATGAACTGCAAGACATCAGGATGCCAGGGTTCTAGA 13769 Query 66458 TAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTG 66517 || || || || | || ||| || ||||||||||| || || | |||| | Sbjct 13770 TATATAGCAAAAGCACCGGGACGCTTATTCCCACCTTGGTCCACATACCTAGCGGTGCTA 13829 Query 66518 TTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGG 66577 ||| | || |||| ||| || || | || || |||| |||||||| ||| |||| Sbjct 13830 TTGTACACTCGCAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAA 13889 Query 66578 GATCCTCGTGC-CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 | | | | ||| || ||| || ||||| ||||||| || || || |||| ||||| Sbjct 13890 G-TGCCCTTGCTACGAATACAATGCACATTAAGACCAACGCCTCCAGCGTTCTTTGAGAT 13948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397489447023680