Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq1977 122 1e-22 >seq1977 Length=22071 Score = 122 bits (134), Expect = 1e-22 Identities = 189/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 162550 GCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCC 162609 ||||| || |||| | ||||| | ||| || ||||||||||| |||| ||| Sbjct 2451 GCTAAGCTCTATGCCTATTGGATTGTTGTAAATTATCGGGAAAGCTATAACATGTTCGCC 2510 Query 162610 TCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGC 162669 | || |||||||| || |||||||| ||| |||||||||||||||| || ||||| ||| Sbjct 2511 TGTAATGGTATTCTCTTTAATCACGAGAGCCCACGCAGAGGAGAGACTTTTGTCACCCGC 2570 Query 162670 AAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA--AAGTGATCTACAACTTG 162727 || ||| ||| || | | ||||||| || || |||| | | |||||| Sbjct 2571 AAAATCACCCGTGCAGTCGCTCGAATTAAACACGGCAAGCAGGAAGT--TGTCGAACTTG 2628 Query 162728 GAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGT 162787 | || || |||||| |||||| ||||| | || ||| || || | || |||||| Sbjct 2629 GTAATCTAAATGCCGAACGTGATTGGGGCTATGCTGGAGATTATGTTTATGCAATGTGGC 2688 Query 162788 TGATGCTTCAGCAAGAGAAGCCAGATGA 162815 | ||||| |||||||| |||| | ||| Sbjct 2689 TTATGCTACAGCAAGACGAGCCTGTTGA 2716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691319075793120