Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocestoides_20corti_20[genbank_20GCA_5F000951315.1_202014-09-26] 7,068 sequences; 117,181,740 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4301 131 3e-28 seq4759 114 2e-23 >seq4301 Length=1782 Score = 131 bits (144), Expect = 3e-28 Identities = 182/249 (73%), Gaps = 7/249 (3%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAG 127 || || |||||||| ||||| |||| ||||| |||||| |||| ||| | || | Sbjct 302 ACGTTAACTTTGAACAAATTTAAGTGCTCAAATCAGGCCGATGTTGCCTGAAAAGTTTTG 243 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAA 186 ||||||||||| ||||||||| | ||||||||||| |||||||| | ||| ||| |||| Sbjct 242 CATGGAATAATGGAATAGGACTT-CGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 185 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||| || || || | |||||| || |||| | ||||||||||||| |||| Sbjct 184 TGATCAAAAGAGACTGGCGGGGGCGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGAC 125 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||| ||| | |||||||| ||| |||| ||||||||||| || || | Sbjct 124 CGTAGCCAGACAAACGAAGGCGAAAGCATTCGTCAAGCATGTTTTCATTGGCCA-TGGGC 66 Query 307 GAAAGTTAG 315 |||||| || Sbjct 65 GAAAGTCAG 57 >seq4759 Length=1290 Score = 114 bits (126), Expect = 2e-23 Identities = 114/143 (80%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAG 127 || ||||||||||| ||||| ||||| ||||| |||||| |||| ||| | || | Sbjct 1127 ACGTTTACTTTGAACAAATTTGAGTGCTCAAATCAGGCCGATGTTGCCTGAAAAGTTTTG 1186 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAA 186 ||||||||||| ||||||||| | ||||||||||| |||||||| | ||| ||| |||| Sbjct 1187 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 1244 Query 187 TGATTAATAGGGATAGTCGGGGG 209 |||| || || || || |||||| Sbjct 1245 TGATCAAAAGAGACAGGCGGGGG 1267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915135313664