Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocestoides_20corti_20[genbank_20GCA_5F000951315.1_202014-09-26] 7,068 sequences; 117,181,740 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq4759 91.5 2e-16 seq4301 84.2 2e-14 >seq4759 Length=1290 Score = 91.5 bits (100), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 5/143 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||||| ||||| ||| | ||||| |||||| |||| ||| | || Sbjct 1127 ACGTTTACTTTGAACAAATTTGAGTGCTCAAATCAGGCCGATGTTGCCTGAAAAGTTTTG 1186 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 1187 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 1244 Query 127 TGATAAATACGGATAGTCGGGGG 149 |||| || | || || |||||| Sbjct 1245 TGATCAAAAGAGACAGGCGGGGG 1267 >seq4301 Length=1782 Score = 84.2 bits (92), Expect = 2e-14 Identities = 128/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTAC 66 || || |||||||| ||||| || | ||||| |||||| |||| ||| | || Sbjct 302 ACGTTAACTTTGAACAAATTTAAGTGCTCAAATCAGGCCGATGTTGCCTGAAAAGTTTTG 243 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||||||||| | ||||||||||| || ||||| | ||| | |||| Sbjct 242 CATGGAATAATGGAATAGGAC-TTCGGTTCTATTTCGTTGGTTT-TCGGATCCGAAGTAA 185 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | || | |||||| || |||| | | ||||||||||| |||| Sbjct 184 TGATCAAAAGAGACTGGCGGGGGCGTTTGTATGGCTGCGCTAGAGGTGAAATTCATGGA 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511964942720