Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocestoides_20corti_20[genbank_20GCA_5F000951315.1_202014-09-26] 7,068 sequences; 117,181,740 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4759 414 3e-113 seq4301 360 6e-97 seq992 183 9e-44 >seq4759 Length=1290 Score = 414 bits (458), Expect = 3e-113 Identities = 419/538 (78%), Gaps = 38/538 (7%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACA-AGACCCAA--AAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| ||||| || | | | ||| || | ||| |||||| | ||||| ||| Sbjct 719 ACTCATTCCGATTACGGAGCCTCTTGTAGGAGTCCCGCATCGGTATTTTTCGTCACCACC 660 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 659 TCCCCGTACTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTCCCTTGGAAGTGGTAGCCGT 600 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 599 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTATCACCATGGT 540 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||||||||||||||||| ||||||| || || |||||| | Sbjct 539 AGGCAGGTCACCTACCATCGAAAGTTGATAGGGCAGACATTTGAAGGACCCGTCGCCGAC 480 Query 240 TCAAGGCC--ATGCGATTCGTTA-AGTTATTATGAATCACC--AAGG-----------AG 283 |||||||| |||||| || | | |||| || ||||| |||| || Sbjct 479 TCAAGGCCGACTGCGATCTGTAACAATTATCCAGAGTCACCAGAAGGTCAACGCGCCCAG 420 Query 284 CC------------CCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC---G 328 || | ||| ||||| || | ||||||||| | ||||| | || | Sbjct 419 CCATGTTGCCACGGCTGAACACGGTTGGCTTCTGATCTAATAAGTGCACCCATCCCCGTG 360 Query 329 A-AGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA 386 | ||| ||| | | |||||||||||||||||| ||| || ||||||||| || Sbjct 359 AGGGTCAGGGCATCGAGGCATGTATTAGCTCTAGAGTTATTACAGTTATCCATTTA-ACG 301 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446 ||||| ||| ||||||| ||| ||||||||||||||||||||| ||||||| ||||| | Sbjct 300 GGTACGATCCAATAAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTATA-AA 242 Query 447 TGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || | ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGCCTGCACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 184 >seq4301 Length=1782 Score = 360 bits (398), Expect = 6e-97 Identities = 390/512 (76%), Gaps = 35/512 (7%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 || ||| || | ||| |||| | ||||| ||||||||||| |||| ||||||||||| Sbjct 712 AAGGAGTCCCGCATCGACATTTTTCGTCACCACCTCCCCGTGCTGGGAGTGGGTAATTTG 771 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| Sbjct 772 CGCGCCTGCTGCCTCCCTTTGAAGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 831 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 ||||| ||||||||||||| ||| | |||||||||| | |||||||||||||||| Sbjct 832 ACCCTGATTCCCCGTTACCAGTTATCAACATGGTAGGCAGGTCACCTACCATCGAAAGTT 891 Query 206 GATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC--ATGCGATTCGTTA-AG 262 || |||||||| ||||||| || || |||| | ||||||||| |||||| || | | Sbjct 892 GACAGGGCAGACATTTGAAGGACCCGTCGCTGACTCAAGGCCGACTGCGATCTGTAACAA 951 Query 263 TTATTATGAATCACC--AAGG-----------AGCC------------CCGAAGGGCGTT 297 |||| || ||||| |||| |||| | ||| || Sbjct 952 TTATCCAGAGTCACCAGAAGGTCAACGCGCCCAGCCATGTTGCCACGGCTGAACACGATT 1011 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCC---GAAG-TCGGGGTTTTTA-GCATGTATT 352 ||||| | ||||||| | | ||||| | || || | || ||| | ||||||||| Sbjct 1012 GGTTTCTGATCTAATGAGTGCACCCATCCCCGTGAGGATCAGGGCACCGAGGCATGTATT 1071 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 ||||| ||| ||| || ||||||||| || || || ||||| ||||| ||| || Sbjct 1072 AGCTCCAGAGTTATTACAGTTATCCATTTA-ACGGGCACGATCAATTAAACCATAGGCGA 1130 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||||||||||| ||||||| ||||| | || | ||| ||||||||||||||| Sbjct 1131 TTTAATGAGCCATTCGCGGTTTCACCGTATA-AAGGCCTGCACTGAGACATGCATGGCTT 1189 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||| Sbjct 1190 AATCTTTGAGACAAGCATATGACTACTGGCAG 1221 >seq992 Length=34106 Score = 183 bits (202), Expect = 9e-44 Identities = 138/160 (86%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 ||||||||||||||||| ||| || ||||||||| || ||||| ||| ||||||| Sbjct 33714 CATGTATTAGCTCTAGAGTTATTACAGTTATCCATTTAACG-GGTACGATCCAATAAACC 33772 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||| ||||||||||||||||||||| ||||||| ||||| | || | ||| ||||||| Sbjct 33773 ATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTATAAAG-GCCTGCACTGAGACATG 33831 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||| Sbjct 33832 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 33871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510293244928