Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09]
42,216 sequences; 620,452,578 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq344 168 1e-39
seq228 96.9 5e-18
>seq344
Length=549053
Score = 168 bits (186), Expect = 1e-39
Identities = 178/226 (79%), Gaps = 9/226 (4%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| |
Sbjct 402353 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 402296
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-AT--TTCAAAGA 117
|||||| | | ||||||||||| | ||||| |||||| | || |||| |
Sbjct 402295 CTCGTTCACGGGGAACAATTGCAAGCCCCGATCCCAGTCACGACGGTTATGGTTCA--GT 402238
Query 118 TTACCCGGACCTGTCGGCCAAGG-TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
|||||| ||| |||| | ||| | | |||||||||| | ||| |||||||| |||
Sbjct 402237 TTACCCAACCCTTTCGGGCTAGGATCCCAAACTCGTTGAAACCGTCATTGTAGCGCACGT 402178
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 402177 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 402133
>seq228
Length=881446
Score = 96.9 bits (106), Expect = 5e-18
Identities = 160/223 (72%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
||||||||||||||||||| ||| ||| ||||| |||||| | || || ||| ||||
Sbjct 164402 TACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTACACTCACCAGG-ATTTTT 164459
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTA 120
||||| | | |||| |||||| | | | ||| |||||| | || | ||| ||
Sbjct 164460 TCGTTCACGGAGAACAGTTGCAAGCACCGAGCCCAGTCACGACGGTTATGGCTAAGTTTT 164519
Query 121 CCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
| | ||| || ||| || | | |||||||||| | ||| ||||| | ||||||
Sbjct 164520 CTCAACCCTTTCGGGCTGAGATTCCAAACTCGTTGAAACCGTCATTGTAG-TCACGTGCG 164578
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
| | | | ||||| ||| | |||||||||||||||| |||||
Sbjct 164579 GTTCCGGAAATCTAGGGGAACCACAGACCTGTTATTG-CTCAA 164620
Score = 93.3 bits (102), Expect = 6e-17
Identities = 159/223 (71%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
||||||||||||||||||| ||| ||| ||| | |||||| | || || |||| |||
Sbjct 166762 TACAAAGGGCAGGGACGTAATCAGCGCAAGCAT-ATGACTTACACTCACCAGGATTTTT- 166819
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATTA 120
||||| | | |||| |||||| | | | ||| |||||| | || | ||| ||
Sbjct 166820 TCGTTCACGGAGAACAGTTGCAAGCACCGAGCCCAGTCACGACGGTTATGGCTAAGTTTT 166879
Query 121 CCCGGACCTGTCGGCCA-AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
| | ||| |||| | || | | |||||||||| | ||| ||||| | ||||||
Sbjct 166880 CTCAACCCTTTCGGGCTGAGATTCCAAACTCGTTGAAACCGTCATTGTAGT-CACGTGCG 166938
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
| | | | ||||| ||| | |||||||||||||||| |||||
Sbjct 166939 GTTCCGGAAATCTAGGGGAACCACAGACCTGTTATTG-CTCAA 166980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751692456440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |