Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq344 168 1e-39 seq228 96.9 5e-18 >seq344 Length=549053 Score = 168 bits (186), Expect = 1e-39 Identities = 178/226 (79%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 402353 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 402296 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-AT--TTCAAAGA 117 |||||| | | ||||||||||| | ||||| |||||| | || |||| | Sbjct 402295 CTCGTTCACGGGGAACAATTGCAAGCCCCGATCCCAGTCACGACGGTTATGGTTCA--GT 402238 Query 118 TTACCCGGACCTGTCGGCCAAGG-TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||||| ||| |||| | ||| | | |||||||||| | ||| |||||||| ||| Sbjct 402237 TTACCCAACCCTTTCGGGCTAGGATCCCAAACTCGTTGAAACCGTCATTGTAGCGCACGT 402178 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 402177 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 402133 >seq228 Length=881446 Score = 96.9 bits (106), Expect = 5e-18 Identities = 160/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||||||||||| ||| ||| ||||| |||||| | || || ||| |||| Sbjct 164402 TACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTACACTCACCAGG-ATTTTT 164459 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTA 120 ||||| | | |||| |||||| | | | ||| |||||| | || | ||| || Sbjct 164460 TCGTTCACGGAGAACAGTTGCAAGCACCGAGCCCAGTCACGACGGTTATGGCTAAGTTTT 164519 Query 121 CCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | | ||| || ||| || | | |||||||||| | ||| ||||| | |||||| Sbjct 164520 CTCAACCCTTTCGGGCTGAGATTCCAAACTCGTTGAAACCGTCATTGTAG-TCACGTGCG 164578 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 | | | | ||||| ||| | |||||||||||||||| ||||| Sbjct 164579 GTTCCGGAAATCTAGGGGAACCACAGACCTGTTATTG-CTCAA 164620 Score = 93.3 bits (102), Expect = 6e-17 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||||||||||| ||| ||| ||| | |||||| | || || |||| ||| Sbjct 166762 TACAAAGGGCAGGGACGTAATCAGCGCAAGCAT-ATGACTTACACTCACCAGGATTTTT- 166819 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATTA 120 ||||| | | |||| |||||| | | | ||| |||||| | || | ||| || Sbjct 166820 TCGTTCACGGAGAACAGTTGCAAGCACCGAGCCCAGTCACGACGGTTATGGCTAAGTTTT 166879 Query 121 CCCGGACCTGTCGGCCA-AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | | ||| |||| | || | | |||||||||| | ||| ||||| | |||||| Sbjct 166880 CTCAACCCTTTCGGGCTGAGATTCCAAACTCGTTGAAACCGTCATTGTAGT-CACGTGCG 166938 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 | | | | ||||| ||| | |||||||||||||||| ||||| Sbjct 166939 GTTCCGGAAATCTAGGGGAACCACAGACCTGTTATTG-CTCAA 166980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751692456440