Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12 158 5e-36 seq17 152 2e-34 seq162 107 8e-21 >seq12 Length=3959830 Score = 158 bits (174), Expect = 5e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||||| |||||||||||||||||||||||| || ||| ||||| Sbjct 127191 GAGCATGAGCGTACATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGCAGGTTGAAG 127250 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| | Sbjct 127251 CCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAGACG 127310 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 127311 TGAGTATAGGGGCGA 127325 >seq17 Length=3474770 Score = 152 bits (168), Expect = 2e-34 Identities = 114/134 (85%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||||| |||||||||||||||||||||||| || || ||||| Sbjct 1183434 GAGCATGAGCGTACATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGATTGAAG 1183375 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| | Sbjct 1183374 CCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAGACG 1183315 Query 669 TGGGTATAGGGGCG 682 || ||||||||||| Sbjct 1183314 TGAGTATAGGGGCG 1183301 >seq162 Length=1159870 Score = 107 bits (118), Expect = 8e-21 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 ||| |||| |||||| || ||| || ||||||||||||||||||||||||||| | | Sbjct 63579 GAACGATGATGAACTGTGTCTGCGCGGGTTGAAGCCAGAGGAAACTCTGGTGGAGGATTG 63520 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| | ||||||||||| || | || |||||||||||| Sbjct 63519 CAGCGGTTCTGACATGCAAATCGATTGTTAGCCGTGAGTATAGGGGCGA 63471 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 4/80 (5%) Strand=Plus/Minus Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||||||| ||||||||||||||| | |||||||||||| | ||||||||||| || Sbjct 63159 TGAAGCCA----AAACTCTGGTGGAGGATTGCAGCGGTTCTGACATGCAAATCGATTGTT 63104 Query 664 AAATTTGGGTATAGGGGCGA 683 | || |||||||||||| Sbjct 63103 AGCCGTGAGTATAGGGGCGA 63084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079094466800