Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09]
42,216 sequences; 620,452,578 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq12 158 5e-36
seq17 152 2e-34
seq162 107 8e-21
>seq12
Length=3959830
Score = 158 bits (174), Expect = 5e-36
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | |||| || ||||| |||||||||||||||||||||||| || ||| |||||
Sbjct 127191 GAGCATGAGCGTACATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGCAGGTTGAAG 127250
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| |
Sbjct 127251 CCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAGACG 127310
Query 669 TGGGTATAGGGGCGA 683
|| ||||||||||||
Sbjct 127311 TGAGTATAGGGGCGA 127325
>seq17
Length=3474770
Score = 152 bits (168), Expect = 2e-34
Identities = 114/134 (85%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | |||| || ||||| |||||||||||||||||||||||| || || |||||
Sbjct 1183434 GAGCATGAGCGTACATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGATTGAAG 1183375
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| |
Sbjct 1183374 CCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAGACG 1183315
Query 669 TGGGTATAGGGGCG 682
|| |||||||||||
Sbjct 1183314 TGAGTATAGGGGCG 1183301
>seq162
Length=1159870
Score = 107 bits (118), Expect = 8e-21
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634
||| |||| |||||| || ||| || ||||||||||||||||||||||||||| | |
Sbjct 63579 GAACGATGATGAACTGTGTCTGCGCGGGTTGAAGCCAGAGGAAACTCTGGTGGAGGATTG 63520
Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||||||| | ||||||||||| || | || ||||||||||||
Sbjct 63519 CAGCGGTTCTGACATGCAAATCGATTGTTAGCCGTGAGTATAGGGGCGA 63471
Score = 77.0 bits (84), Expect = 1e-11
Identities = 65/80 (81%), Gaps = 4/80 (5%)
Strand=Plus/Minus
Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663
|||||||| ||||||||||||||| | |||||||||||| | ||||||||||| ||
Sbjct 63159 TGAAGCCA----AAACTCTGGTGGAGGATTGCAGCGGTTCTGACATGCAAATCGATTGTT 63104
Query 664 AAATTTGGGTATAGGGGCGA 683
| || ||||||||||||
Sbjct 63103 AGCCGTGAGTATAGGGGCGA 63084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079094466800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |