Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq344 179 6e-43 seq228 149 1e-33 seq281 140 5e-31 >seq344 Length=549053 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| Sbjct 402000 CTATTTAGCAGGCCAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 401941 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 401940 ACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTATCAATCTGTC 401884 Score = 102 bits (112), Expect = 1e-19 Identities = 95/116 (82%), Gaps = 5/116 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||||| | |||||||||||||||||||| Sbjct 402207 ACTCGTTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGA 402148 Query 62 CCTGTTATTGCCTCAAACTTCCAT-TGGCTGG-AAGCCAATAGTCCCTCTAAGAAG 115 |||||||||| ||||| || | | | |||| | ||| | |||||||||||||| Sbjct 402147 CCTGTTATTG-CTCAA--TTGCGTGCGACTGGCACGCCGCTTGTCCCTCTAAGAAG 402095 >seq228 Length=881446 Score = 149 bits (164), Expect = 1e-33 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||| ||||| || |||| ||||||||||||||||||||||||||| | |||||||| Sbjct 167112 CTATTTGGCAGGCCAAAGTCTTGTTCGTTATCGGAATTAACCAGACAAACCGCTCCACCA 167171 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| ||||||| ||| ||||||||||||||||| ||||| ||| Sbjct 167172 GCTAAGAACGGCCATGTACCACCAACCAACGAATCAAGAAAGAGCTACCAATCCGTC 167228 >seq281 Length=685225 Score = 140 bits (154), Expect = 5e-31 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| | || ||| ||||||||||||||||||||| ||||||| ||| | || Sbjct 83898 CTATTTAGCAAGCCAAAGTCCCGTTCGTTATCGGAATTAACCGTACAAATCGCTCTATCA 83839 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||| Sbjct 83838 ACTAAGAACGGCCATGCACCACCAAACATCGAATCAAAAAAGAGCTACCAATCTG 83784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796474134696