Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09]
42,216 sequences; 620,452,578 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq344 179 6e-43
seq228 149 1e-33
seq281 140 5e-31
>seq344
Length=549053
Score = 179 bits (198), Expect = 6e-43
Identities = 110/117 (94%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 402000 CTATTTAGCAGGCCAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 401941
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 401940 ACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTATCAATCTGTC 401884
Score = 102 bits (112), Expect = 1e-19
Identities = 95/116 (82%), Gaps = 5/116 (4%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || |||||| |||||||| |||||||||| | ||||||||||||||||||||
Sbjct 402207 ACTCGTTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGA 402148
Query 62 CCTGTTATTGCCTCAAACTTCCAT-TGGCTGG-AAGCCAATAGTCCCTCTAAGAAG 115
|||||||||| ||||| || | | | |||| | ||| | ||||||||||||||
Sbjct 402147 CCTGTTATTG-CTCAA--TTGCGTGCGACTGGCACGCCGCTTGTCCCTCTAAGAAG 402095
>seq228
Length=881446
Score = 149 bits (164), Expect = 1e-33
Identities = 103/117 (88%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||| ||||| || |||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 167112 CTATTTGGCAGGCCAAAGTCTTGTTCGTTATCGGAATTAACCAGACAAACCGCTCCACCA 167171
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||| ||||||| ||| ||||||||||||||||| ||||| |||
Sbjct 167172 GCTAAGAACGGCCATGTACCACCAACCAACGAATCAAGAAAGAGCTACCAATCCGTC 167228
>seq281
Length=685225
Score = 140 bits (154), Expect = 5e-31
Identities = 100/115 (87%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||| | || ||| ||||||||||||||||||||| ||||||| ||| | ||
Sbjct 83898 CTATTTAGCAAGCCAAAGTCCCGTTCGTTATCGGAATTAACCGTACAAATCGCTCTATCA 83839
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
|||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||
Sbjct 83838 ACTAAGAACGGCCATGCACCACCAAACATCGAATCAAAAAAGAGCTACCAATCTG 83784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796474134696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |