Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1282 333 5e-89 seq113 233 3e-59 seq23 185 1e-44 seq284 152 9e-35 seq27 143 5e-32 seq16 132 8e-29 seq57 80.6 5e-13 >seq1282 Length=6853 Score = 333 bits (368), Expect = 5e-89 Identities = 235/269 (87%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2719 TCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 2778 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| ||||||||| || | | |||| |||||||| Sbjct 2779 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCGTCACAACGCTAGGGAGAGCCGA 2838 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 2839 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 2898 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG------AGGGACTAAAGGATC 264 ||||||||||||||||| ||||||| || ||||| | || | | |||||||| Sbjct 2899 CTGTGGTAACTTTTCTGACACCTCTTGCTTCAAACTCCGAATATCAAAATCAAAAGGATC 2958 Query 265 GATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||| | |||||| ||| ||||||| Sbjct 2959 GATAGGCCGCGCTTTCACGGTCTGTATTC 2987 >seq113 Length=1466806 Score = 233 bits (258), Expect = 3e-59 Identities = 202/248 (81%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||||||||||||||||||| |||| ||| |||||||||||| ||| ||||||| Sbjct 1317549 TCATTAGTAGGGTAAAACTAACCTGCCTCACGACTGTCTAAACCCAGTCCACATTCCCTA 1317490 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| ||||||||| || ||| |||| |||||||| Sbjct 1317489 TTAGTGGGTGAACAATCCAAAGCTTGGTGAATTCTGCGTC-ACATGCTAGGGAGAGCCGA 1317431 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||||| ||| || | |||||||||||| | ||| |||||||||||||||||| Sbjct 1317430 CATCAGAGGATC-AAATGCGAATTCGCTATGAACGTTCGGCCGCCACAAGCCAGTTATCC 1317372 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA------GGATC 264 | ||| ||| ||||| | ||||||| |||||||| | ||| | ||| ||||| Sbjct 1317371 CGGTGATAATTTTTCCGACACCTCTTGCCTCAAACTCCGAATATCAAAATCAAACGGATC 1317312 Query 265 GATAGGCC 272 |||||||| Sbjct 1317311 GATAGGCC 1317304 >seq23 Length=3026810 Score = 185 bits (204), Expect = 1e-44 Identities = 165/207 (80%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| ||||||||| || | ||||| |||||||| Sbjct 1918953 AGTGGGTGAACAATCCAACGCTTTGTGAATTCTGCGTCACAACACTAGGATGAGCCGACC 1919012 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||| | ||| |||||||||||||||||||| ||||| |||||| |||||| Sbjct 1919013 TCGAAGGATCACAGAGCGACGTCGCTATGAACGCTTGGTCGCCACGGGCCAGTCATCCCT 1919072 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG------AGGGACTAAAGGATCGA 266 | |||||||||| | ||||||| || ||||||| || | | ||||||||| Sbjct 1919073 GCGGTAACTTTTTCGACACCTCTTGCTTCAAATTCCGAACATCAAAATCAAAAGGATCGG 1919132 Query 267 TAGGCCACACTTTCATGGTTTGTATTC 293 |||||||| |||||| ||| ||||||| Sbjct 1919133 TAGGCCACGCTTTCACGGTCTGTATTC 1919159 >seq284 Length=680834 Score = 152 bits (168), Expect = 9e-35 Identities = 161/211 (76%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 || ||||| ||||||||||||||||| || |||||||||||| ||||||||||||||| Sbjct 362979 ATTAGTAGCACAAAACTAACCTGTCTCACGATGGTCTAAACCCAACTCACGTTCCCTATT 363038 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||| | |||| |||||| | || |||| | | | ||| |||||| ||| Sbjct 363039 AGTGGGTGGAAAATCACACGCTTGGTGGATCCTGCGCCACAACGCCAGGGAGAGCCAACA 363098 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||| |||| |||| |||| ||| | | || ||||| |||||||||| Sbjct 363099 CCGAAGGATCGTAAAG--ACGTTGCTACGAAGGTTCGG-----TCAAGCTAGTTATCCCT 363151 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 || || ||||||||| ||||| || |||| Sbjct 363152 GTAGTGACTTTTCTGAGGCCTCTTGCTTCAA 363182 >seq27 Length=2832798 Score = 143 bits (158), Expect = 5e-32 Identities = 149/194 (77%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||||| |||||||||||||||||| |||||| ||| ||||| ||||||||| | Sbjct 2666064 TCATTAGTAGGTTAAAACTAACCTGTCTCACCACGGTCGAAAACCAGCCCACGTTCCCAA 2666005 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| ||||| ||| ||| || | || |||||| || | || | |||||| Sbjct 2666004 ATAGTGAGTGAAAAATTCAATGCCTTATGAGTTCTGCGTCACAACTCTATG-GGAGCCGG 2665946 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||| ||||||||| |||||||||||| | | | ||||||||| ||||| | Sbjct 2665945 AATCTAAGGGTCAAAAAGCGACGTCGCTATGATTTCCTAACCGCCACAAGCTGGTTATTC 2665886 Query 211 CTGTGGTAACTTTT 224 | ||||| |||||| Sbjct 2665885 CAGTGGTGACTTTT 2665872 >seq16 Length=3577201 Score = 132 bits (146), Expect = 8e-29 Identities = 182/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 ||||| |||||||||| | | || || |||| |||||||||| ||||||||||| Sbjct 2126906 AAACTGACCTGTCTCACAATTGCCTGAAATAAGCTTTAGTTCCCTATTGGTGGGTGAACA 2126965 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||| || ||| ||| ||| ||| || | ||||||||||| || |||||| Sbjct 2126966 ATCCAACATTTGGTTAATCATGCGTCGTAATGCTATGCGGAGCCGACATCAAACGATCAA 2127025 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 || || |||||||||| || || ||| ||| || ||||||||||| |||| | Sbjct 2127026 AATTTTTTGTTGCTATGAACGAATGACTTCCAGAAGTCACTTATCCCTGTGTCAACTGAT 2127085 Query 225 CTGGCACCTCTAGCCTCAAATTTCG------AGGGACTAAAGGATCGATAGGCCACACTT 278 || ||||||| || ||||| |||| | | |||||||| ||| | | ||| | Sbjct 2127086 TTGACACCTCTTGCTTCAAACTTCGAATATCAAAACCAAAAGGATCTATATGTCTCACCT 2127145 Query 279 TCATGGTTTGTATTC 293 ||||| ||||||| Sbjct 2127146 CTATGGTCTGTATTC 2127160 >seq57 Length=2022404 Score = 80.6 bits (88), Expect = 5e-13 Identities = 124/174 (71%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 |||||| || |||| ||| ||| | ||||||||||||| |||||||| | | | |||| Sbjct 613537 TAGGGTCAACTTAACATGTATCACGGCGGTCTAAACCCAACTCACGTTTCATTTCAGTGA 613596 Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 ||||||| | ||| | |||| ||| | || ||| ||||||||||||||| Sbjct 613597 GTGAACAGTGCAAAACCCCAAGAAT--TGCGGCAAAATATCAGGGAGAGCCGACATCGAA 613654 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | |||| | | |||| |||| || | | |||||||||||||| |||| Sbjct 613655 CG--CAAACTGACAGACAGCTAGGAACTCTCGTCCGCCACAAGCCAGTT-TCCC 613705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854039306496