Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09]
42,216 sequences; 620,452,578 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1282 333 5e-89
seq113 233 3e-59
seq23 185 1e-44
seq284 152 9e-35
seq27 143 5e-32
seq16 132 8e-29
seq57 80.6 5e-13
>seq1282
Length=6853
Score = 333 bits (368), Expect = 5e-89
Identities = 235/269 (87%), Gaps = 6/269 (2%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2719 TCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 2778
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||||||| ||||||||| || | | |||| ||||||||
Sbjct 2779 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCGTCACAACGCTAGGGAGAGCCGA 2838
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 2839 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 2898
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG------AGGGACTAAAGGATC 264
||||||||||||||||| ||||||| || ||||| | || | | ||||||||
Sbjct 2899 CTGTGGTAACTTTTCTGACACCTCTTGCTTCAAACTCCGAATATCAAAATCAAAAGGATC 2958
Query 265 GATAGGCCACACTTTCATGGTTTGTATTC 293
|||||||| | |||||| ||| |||||||
Sbjct 2959 GATAGGCCGCGCTTTCACGGTCTGTATTC 2987
>seq113
Length=1466806
Score = 233 bits (258), Expect = 3e-59
Identities = 202/248 (81%), Gaps = 8/248 (3%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| |||||||||||||||||||| |||| ||| |||||||||||| ||| |||||||
Sbjct 1317549 TCATTAGTAGGGTAAAACTAACCTGCCTCACGACTGTCTAAACCCAGTCCACATTCCCTA 1317490
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||||||| |||| ||||||||| || ||| |||| ||||||||
Sbjct 1317489 TTAGTGGGTGAACAATCCAAAGCTTGGTGAATTCTGCGTC-ACATGCTAGGGAGAGCCGA 1317431
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||| |||||| ||| || | |||||||||||| | ||| ||||||||||||||||||
Sbjct 1317430 CATCAGAGGATC-AAATGCGAATTCGCTATGAACGTTCGGCCGCCACAAGCCAGTTATCC 1317372
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA------GGATC 264
| ||| ||| ||||| | ||||||| |||||||| | ||| | ||| |||||
Sbjct 1317371 CGGTGATAATTTTTCCGACACCTCTTGCCTCAAACTCCGAATATCAAAATCAAACGGATC 1317312
Query 265 GATAGGCC 272
||||||||
Sbjct 1317311 GATAGGCC 1317304
>seq23
Length=3026810
Score = 185 bits (204), Expect = 1e-44
Identities = 165/207 (80%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
||||||||||||||||||||||| ||||||||| || | ||||| ||||||||
Sbjct 1918953 AGTGGGTGAACAATCCAACGCTTTGTGAATTCTGCGTCACAACACTAGGATGAGCCGACC 1919012
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
||||||||||| | ||| |||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1919013 TCGAAGGATCACAGAGCGACGTCGCTATGAACGCTTGGTCGCCACGGGCCAGTCATCCCT 1919072
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG------AGGGACTAAAGGATCGA 266
| |||||||||| | ||||||| || ||||||| || | | |||||||||
Sbjct 1919073 GCGGTAACTTTTTCGACACCTCTTGCTTCAAATTCCGAACATCAAAATCAAAAGGATCGG 1919132
Query 267 TAGGCCACACTTTCATGGTTTGTATTC 293
|||||||| |||||| ||| |||||||
Sbjct 1919133 TAGGCCACGCTTTCACGGTCTGTATTC 1919159
>seq284
Length=680834
Score = 152 bits (168), Expect = 9e-35
Identities = 161/211 (76%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|| ||||| ||||||||||||||||| || |||||||||||| |||||||||||||||
Sbjct 362979 ATTAGTAGCACAAAACTAACCTGTCTCACGATGGTCTAAACCCAACTCACGTTCCCTATT 363038
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
|||||||| | |||| |||||| | || |||| | | | ||| |||||| |||
Sbjct 363039 AGTGGGTGGAAAATCACACGCTTGGTGGATCCTGCGCCACAACGCCAGGGAGAGCCAACA 363098
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
||||||||| |||| |||| |||| ||| | | || ||||| ||||||||||
Sbjct 363099 CCGAAGGATCGTAAAG--ACGTTGCTACGAAGGTTCGG-----TCAAGCTAGTTATCCCT 363151
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243
|| || ||||||||| ||||| || ||||
Sbjct 363152 GTAGTGACTTTTCTGAGGCCTCTTGCTTCAA 363182
>seq27
Length=2832798
Score = 143 bits (158), Expect = 5e-32
Identities = 149/194 (77%), Gaps = 1/194 (1%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| |||||| |||||||||||||||||| |||||| ||| ||||| ||||||||| |
Sbjct 2666064 TCATTAGTAGGTTAAAACTAACCTGTCTCACCACGGTCGAAAACCAGCCCACGTTCCCAA 2666005
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||| ||||| ||| ||| || | || |||||| || | || | ||||||
Sbjct 2666004 ATAGTGAGTGAAAAATTCAATGCCTTATGAGTTCTGCGTCACAACTCTATG-GGAGCCGG 2665946
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| |||| ||||||||| |||||||||||| | | | ||||||||| ||||| |
Sbjct 2665945 AATCTAAGGGTCAAAAAGCGACGTCGCTATGATTTCCTAACCGCCACAAGCTGGTTATTC 2665886
Query 211 CTGTGGTAACTTTT 224
| ||||| ||||||
Sbjct 2665885 CAGTGGTGACTTTT 2665872
>seq16
Length=3577201
Score = 132 bits (146), Expect = 8e-29
Identities = 182/255 (71%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104
||||| |||||||||| | | || || |||| |||||||||| |||||||||||
Sbjct 2126906 AAACTGACCTGTCTCACAATTGCCTGAAATAAGCTTTAGTTCCCTATTGGTGGGTGAACA 2126965
Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164
||||||| || ||| ||| ||| ||| || | ||||||||||| || ||||||
Sbjct 2126966 ATCCAACATTTGGTTAATCATGCGTCGTAATGCTATGCGGAGCCGACATCAAACGATCAA 2127025
Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
|| || |||||||||| || || ||| ||| || ||||||||||| |||| |
Sbjct 2127026 AATTTTTTGTTGCTATGAACGAATGACTTCCAGAAGTCACTTATCCCTGTGTCAACTGAT 2127085
Query 225 CTGGCACCTCTAGCCTCAAATTTCG------AGGGACTAAAGGATCGATAGGCCACACTT 278
|| ||||||| || ||||| |||| | | |||||||| ||| | | ||| |
Sbjct 2127086 TTGACACCTCTTGCTTCAAACTTCGAATATCAAAACCAAAAGGATCTATATGTCTCACCT 2127145
Query 279 TCATGGTTTGTATTC 293
||||| |||||||
Sbjct 2127146 CTATGGTCTGTATTC 2127160
>seq57
Length=2022404
Score = 80.6 bits (88), Expect = 5e-13
Identities = 124/174 (71%), Gaps = 5/174 (3%)
Strand=Plus/Plus
Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97
|||||| || |||| ||| ||| | ||||||||||||| |||||||| | | | ||||
Sbjct 613537 TAGGGTCAACTTAACATGTATCACGGCGGTCTAAACCCAACTCACGTTTCATTTCAGTGA 613596
Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157
||||||| | ||| | |||| ||| | || ||| |||||||||||||||
Sbjct 613597 GTGAACAGTGCAAAACCCCAAGAAT--TGCGGCAAAATATCAGGGAGAGCCGACATCGAA 613654
Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
| |||| | | |||| |||| || | | |||||||||||||| ||||
Sbjct 613655 CG--CAAACTGACAGACAGCTAGGAACTCTCGTCCGCCACAAGCCAGTT-TCCC 613705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854039306496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |