Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq344 176 9e-42 seq228 84.2 4e-14 >seq344 Length=549053 Score = 176 bits (194), Expect = 9e-42 Identities = 199/261 (76%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT--CAAGCCG-ATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||| | |||| | || || | | || ||||| |||||||||||||| Sbjct 402095 CTTCTTAGAGGGACAAGCGGCGTGCCAGTCGCACGCAA--TTGAG-CAATAACAGGTCTG 402151 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||| | |||||||||| |||||||| |||| | ||||||||| Sbjct 402152 TGATGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAATGACGGTTTCAACGAGTTTGG 402211 Query 189 CA-CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||| | ||| |||| ||||||| || | | |||||| ||||| | | Sbjct 402212 GATCCTAGCCCGAAAGGGTTGGGTAAACTGAACCATAACCGTCGTGACTGGGATCGGGGC 402271 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||| || | | | |||||||||| ||| ||||| || ||||| ||| ||| || Sbjct 402272 TTGCAATTGTTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTG 402331 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 402332 ATTACGTCCCTGCCCTTTGTA 402352 >seq228 Length=881446 Score = 84.2 bits (92), Expect = 4e-14 Identities = 181/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||| ||||||||| | |||| | || || | | | ||||| |||||||||||||| Sbjct 167019 GCTTCATAGAGGGACAAGCGGCGTGCCAGTCGCTCGC-GCTTGAG-CAATAACAGGTCTG 166962 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 || | ||| ||||| | | | ||||||| | ||||| |||| | ||||||||| Sbjct 166961 TGGTTCCCCTAGATTTCCGGAACCGCACGTGA-CTACAATGACGGTTTCAACGAGTTTGG 166903 Query 189 CACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTGGGGATAGAGC 246 | || ||| ||| || || | || ||| | | |||||| ||||| | || Sbjct 166902 AATCTCAGCCCGAAAGGGTTGAGAAAACTTAGCCATAACCGTCGTGACTGGGCTCGGTGC 166843 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||| | || | | ||||| || ||| || || | ||||| || ||| | Sbjct 166842 -TTGCAACTGTTCTCCGTGAACGAAAAAATCCTGGTGAGTGTAAGTCATATGCTTGCGCT 166784 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 166783 GATTACGTCCCTGCCCTTTGTA 166762 Score = 80.6 bits (88), Expect = 5e-13 Identities = 155/222 (70%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||||||||||| | ||| ||||| | | | ||||||| | ||||| | Sbjct 164620 TTGAG-CAATAACAGGTCTGTGGTTCCCCTAGATTTCCGGAACCGCACGTGA-CTACAAT 164563 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCT 227 ||| | ||||||||| | || ||| ||| || || | || ||| | | Sbjct 164562 GACGGTTTCAACGAGTTTGGAATCTCAGCCCGAAAGGGTTGAGAAAACTTAGCCATAACC 164503 Query 228 GTCGTG-CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 |||||| ||||| | || |||||| | || | | ||||| || ||| || || Sbjct 164502 GTCGTGACTGGGCTCGGTGC-TTGCAACTGTTCTCCGTGAACGAAAAAATCCTGGTGAGT 164444 Query 287 GCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||| ||||||||||||||||||||||| Sbjct 164443 GTAAGTCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 164402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946800130048