Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09]
42,216 sequences; 620,452,578 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq344 176 9e-42
seq228 84.2 4e-14
>seq344
Length=549053
Score = 176 bits (194), Expect = 9e-42
Identities = 199/261 (76%), Gaps = 7/261 (3%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGCT--CAAGCCG-ATGGAAGTTTGAGGCAATAACAGGTCTG 128
|||||||||||||| | |||| | || || | | || ||||| ||||||||||||||
Sbjct 402095 CTTCTTAGAGGGACAAGCGGCGTGCCAGTCGCACGCAA--TTGAG-CAATAACAGGTCTG 402151
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
|||||||||||||||| | |||||||||| |||||||| |||| | |||||||||
Sbjct 402152 TGATGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAATGACGGTTTCAACGAGTTTGG 402211
Query 189 CA-CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247
| ||| | ||| |||| ||||||| || | | |||||| ||||| | |
Sbjct 402212 GATCCTAGCCCGAAAGGGTTGGGTAAACTGAACCATAACCGTCGTGACTGGGATCGGGGC 402271
Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307
|||||||| || | | | |||||||||| ||| ||||| || ||||| ||| ||| ||
Sbjct 402272 TTGCAATTGTTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTG 402331
Query 308 ATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||
Sbjct 402332 ATTACGTCCCTGCCCTTTGTA 402352
>seq228
Length=881446
Score = 84.2 bits (92), Expect = 4e-14
Identities = 181/262 (69%), Gaps = 8/262 (3%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
||||| ||||||||| | |||| | || || | | | ||||| ||||||||||||||
Sbjct 167019 GCTTCATAGAGGGACAAGCGGCGTGCCAGTCGCTCGC-GCTTGAG-CAATAACAGGTCTG 166962
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
|| | ||| ||||| | | | ||||||| | ||||| |||| | |||||||||
Sbjct 166961 TGGTTCCCCTAGATTTCCGGAACCGCACGTGA-CTACAATGACGGTTTCAACGAGTTTGG 166903
Query 189 CACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCTGTCGTG-CTGGGGATAGAGC 246
| || ||| ||| || || | || ||| | | |||||| ||||| | ||
Sbjct 166902 AATCTCAGCCCGAAAGGGTTGAGAAAACTTAGCCATAACCGTCGTGACTGGGCTCGGTGC 166843
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
|||||| | || | | ||||| || ||| || || | ||||| || ||| |
Sbjct 166842 -TTGCAACTGTTCTCCGTGAACGAAAAAATCCTGGTGAGTGTAAGTCATATGCTTGCGCT 166784
Query 307 GATTACGTCCCTGCCCTTTGTA 328
||||||||||||||||||||||
Sbjct 166783 GATTACGTCCCTGCCCTTTGTA 166762
Score = 80.6 bits (88), Expect = 5e-13
Identities = 155/222 (70%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168
||||| |||||||||||||||| | ||| ||||| | | | ||||||| | ||||| |
Sbjct 164620 TTGAG-CAATAACAGGTCTGTGGTTCCCCTAGATTTCCGGAACCGCACGTGA-CTACAAT 164563
Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAA-GGTCTGGGTAATCTTGTTAAACTCT 227
||| | ||||||||| | || ||| ||| || || | || ||| | |
Sbjct 164562 GACGGTTTCAACGAGTTTGGAATCTCAGCCCGAAAGGGTTGAGAAAACTTAGCCATAACC 164503
Query 228 GTCGTG-CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286
|||||| ||||| | || |||||| | || | | ||||| || ||| || ||
Sbjct 164502 GTCGTGACTGGGCTCGGTGC-TTGCAACTGTTCTCCGTGAACGAAAAAATCCTGGTGAGT 164444
Query 287 GCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| ||| |||||||||||||||||||||||
Sbjct 164443 GTAAGTCATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 164402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946800130048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |