Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09]
42,216 sequences; 620,452,578 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq284 372 1e-100
seq1862 203 1e-49
seq16 172 2e-40
seq1282 159 1e-36
seq132 147 7e-33
seq416 145 2e-32
seq1178 134 5e-29
seq233 98.7 3e-18
>seq284
Length=680834
Score = 372 bits (412), Expect = 1e-100
Identities = 306/375 (82%), Gaps = 23/375 (6%)
Strand=Plus/Plus
Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234
||| || | || |||| ||| |||| | | ||||||||||||||||| ||| | | |
Sbjct 363428 CCGTTTTACTGCATAAGCAAAGGAACGTTGACGGTAGTGGTATTTCACTGGCGACAAGCC 363487
Query 235 GG-------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287
|| |||||||||||||||| || ||||| || |||||||||||||||||
Sbjct 363488 GGAGCCCATCTCCCACTTATTCTACGCCC-----GTCATGTCGCAAAGTCGGACTAGAGT 363542
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|||||||| |||||||||||| ||| ||| |||| | ||||||| ||||||||||||||
Sbjct 363543 CAAGCTCAGCAGGGTCTTCTTCCCCTGCTAATTCTGTCAAGCCCATTCCCTTGGCTGTGA 363602
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
||||||||||||||||||||||||||| ||||||||||||||| ||||||| || || |
Sbjct 363603 TTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCGATTCATGTACGCCATT 363662
Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT---- 463
||||||||||| |||||||||||||| || |||||||||||| || | ||||||||
Sbjct 363663 AATTAGATGACAAGGCATTTGGCTACTTTTAGAGAGTCATAGATAATTCCGCCGTTAACA 363722
Query 464 -------TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516
|||| ||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 363723 ACCCTCCCACCCCCGCTTCATTGAATTTCTTCACATTGACATTCAGAGCATTGGGCAGAA 363782
Query 517 ATCACATTGCGTCAA 531
|||||||||||||||
Sbjct 363783 ATCACATTGCGTCAA 363797
>seq1862
Length=2714
Score = 203 bits (224), Expect = 1e-49
Identities = 137/154 (89%), Gaps = 7/154 (5%)
Strand=Plus/Minus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
||| ||||||| ||||||||||||||||||||| |||| |||| |||||||||||||| |
Sbjct 2679 GACGAGAGTCATGCTCAACAGGGTCTTCTTTCCGCGCTAATTCTGCCAAGCCCGTTCCAT 2620
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
||||||||||||||| | |||||||||||| |||||||||||||||||||| ||
Sbjct 2619 TGGCTGTGGTTTCGC-------TGGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTG 2567
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
||||||||||||||||||||||||||||||| ||
Sbjct 2566 CGCGTCACTAATTAGATGACGAGGCATTTGGATA 2533
>seq16
Length=3577201
Score = 172 bits (190), Expect = 2e-40
Identities = 200/266 (75%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327
|||| |||||| | | |||| | |||| ||||||| ||||||| | | ||| | ||
Sbjct 2127452 TCACGAAGTCGTATTGATGTCAGGTTCAATAGGGTCTACTTTCCCTGGTAATTTAGGTAA 2127511
Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT--CTCGT 385
|||||||||||||||||||||||| | | || ||||| || ||||| ||| || ||
Sbjct 2127512 GCCCGTTCCCTTGGCTGTGGTTTCTCCTGGTAATAGATGGGTACAGT---AATACCTTGT 2127568
Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTC 445
|||| || || |||||| ||| |||||| || || ||| |||||||| || || | ||
Sbjct 2127569 TAATTTATCCACGCGCGTTACTGATTAGAAGATGAAGCACTTGGCTACTTTGGGATATTC 2127628
Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505
| | | ||| ||||||||| |||||| |||||||||||||| |||| | || |||
Sbjct 2127629 --GGCTTCGCCCACCGTTTACCAGCGCTTCATTGAATTTCTTCACATTGATAATCTGAGT 2127686
Query 506 ACTGGGCAGAAATCACATTGCGTCAA 531
|||||||| | || |||||||||
Sbjct 2127687 ACTGGGCAAACAT--TTTTGCGTCAA 2127710
>seq1282
Length=6853
Score = 159 bits (176), Expect = 1e-36
Identities = 130/157 (83%), Gaps = 7/157 (4%)
Strand=Plus/Plus
Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-----CC 229
||| || | ||| |||| ||| ||||||| | ||||||||||||||||| ||| ||
Sbjct 3263 CCGTTTTACTGAATAAGAAAAGAAACGATGACGGTAGTGGTATTTCACTGGCGACAGGCC 3322
Query 230 GAAACGG--CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287
||| | ||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 3323 GAAGCCCATCTCCCACTTATTCTACACCCGTCATGTCTCCTCACAAAGTCGGACTAGAGT 3382
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324
||||||||||||||||||||||||||||| |||| ||
Sbjct 3383 CAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTCTGC 3419
Score = 87.8 bits (96), Expect = 6e-15
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||| ||| || || |||| || || |||| | |||| ||||||||||||||
Sbjct 3021 CTTTTACTCCACGCCAGGTTTCCGTCCTGGCTGAGCTCACCTTGGGACACCTGCGTTACC 3080
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117
||| |||||||| ||||||||| ||||| |||| ||||||| |||| |||
Sbjct 3081 ATTTGACAGATGTACCGCCCCAGTCAAACCCCCCGCCTGACATTGTCTTCA 3131
>seq132
Length=1381212
Score = 147 bits (162), Expect = 7e-33
Identities = 122/148 (82%), Gaps = 7/148 (5%)
Strand=Plus/Plus
Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-----CC 229
||| || | ||| |||| ||| ||||||| | ||||||||||||||||| ||| ||
Sbjct 52991 CCGTTTTACTGAATAAGCAAAGAAACGATGACGGTAGTGGTATTTCACTGGCGACAGGCC 53050
Query 230 GAAACGG--CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287
||| | ||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 53051 GAAGCCCATCTCCCACTTATTCTACACCCGTCATGTCTCCTCACAAAGTCGGACTAGAGT 53110
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGC 315
|||||||||||||||||||||||| |||
Sbjct 53111 CAAGCTCAACAGGGTCTTCTTTCCACGC 53138
>seq416
Length=410017
Score = 145 bits (160), Expect = 2e-32
Identities = 85/88 (97%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 401513 TCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACATTGACATTCAGA 401454
Query 504 GCACTGGGCAGAAATCACATTGCGTCAA 531
||||||||||||||||||||||||||||
Sbjct 401453 GCACTGGGCAGAAATCACATTGCGTCAA 401426
>seq1178
Length=8769
Score = 134 bits (148), Expect = 5e-29
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 7752 TAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAACTAG 7811
Query 414 ATGACGAGGCATTTGGCTA 432
|||||||||||||||||||
Sbjct 7812 ATGACGAGGCATTTGGCTA 7830
>seq233
Length=855571
Score = 98.7 bits (108), Expect = 3e-18
Identities = 63/69 (91%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522
|||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 536441 TTACCCGCTTTTCATTGAATTTCTTCACATTGACATTCAGAGCACTGGGCAGGAATCACA 536500
Query 523 TTGCGTCAA 531
|||||||||
Sbjct 536501 TTGCGTCAA 536509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634509683968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |