Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq284 372 1e-100 seq1862 203 1e-49 seq16 172 2e-40 seq1282 159 1e-36 seq132 147 7e-33 seq416 145 2e-32 seq1178 134 5e-29 seq233 98.7 3e-18 >seq284 Length=680834 Score = 372 bits (412), Expect = 1e-100 Identities = 306/375 (82%), Gaps = 23/375 (6%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234 ||| || | || |||| ||| |||| | | ||||||||||||||||| ||| | | | Sbjct 363428 CCGTTTTACTGCATAAGCAAAGGAACGTTGACGGTAGTGGTATTTCACTGGCGACAAGCC 363487 Query 235 GG-------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 || |||||||||||||||| || ||||| || ||||||||||||||||| Sbjct 363488 GGAGCCCATCTCCCACTTATTCTACGCCC-----GTCATGTCGCAAAGTCGGACTAGAGT 363542 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||||| |||||||||||| ||| ||| |||| | ||||||| |||||||||||||| Sbjct 363543 CAAGCTCAGCAGGGTCTTCTTCCCCTGCTAATTCTGTCAAGCCCATTCCCTTGGCTGTGA 363602 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||||||||||||||||||||||||||| ||||||||||||||| ||||||| || || | Sbjct 363603 TTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCGATTCATGTACGCCATT 363662 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT---- 463 ||||||||||| |||||||||||||| || |||||||||||| || | |||||||| Sbjct 363663 AATTAGATGACAAGGCATTTGGCTACTTTTAGAGAGTCATAGATAATTCCGCCGTTAACA 363722 Query 464 -------TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 |||| ||||| |||||||||||||| ||||||||||||||| ||||||||| Sbjct 363723 ACCCTCCCACCCCCGCTTCATTGAATTTCTTCACATTGACATTCAGAGCATTGGGCAGAA 363782 Query 517 ATCACATTGCGTCAA 531 ||||||||||||||| Sbjct 363783 ATCACATTGCGTCAA 363797 >seq1862 Length=2714 Score = 203 bits (224), Expect = 1e-49 Identities = 137/154 (89%), Gaps = 7/154 (5%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||| ||||||| ||||||||||||||||||||| |||| |||| |||||||||||||| | Sbjct 2679 GACGAGAGTCATGCTCAACAGGGTCTTCTTTCCGCGCTAATTCTGCCAAGCCCGTTCCAT 2620 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||||| | |||||||||||| |||||||||||||||||||| || Sbjct 2619 TGGCTGTGGTTTCGC-------TGGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTG 2567 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||| || Sbjct 2566 CGCGTCACTAATTAGATGACGAGGCATTTGGATA 2533 >seq16 Length=3577201 Score = 172 bits (190), Expect = 2e-40 Identities = 200/266 (75%), Gaps = 9/266 (3%) Strand=Plus/Plus Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 |||| |||||| | | |||| | |||| ||||||| ||||||| | | ||| | || Sbjct 2127452 TCACGAAGTCGTATTGATGTCAGGTTCAATAGGGTCTACTTTCCCTGGTAATTTAGGTAA 2127511 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT--CTCGT 385 |||||||||||||||||||||||| | | || ||||| || ||||| ||| || || Sbjct 2127512 GCCCGTTCCCTTGGCTGTGGTTTCTCCTGGTAATAGATGGGTACAGT---AATACCTTGT 2127568 Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTC 445 |||| || || |||||| ||| |||||| || || ||| |||||||| || || | || Sbjct 2127569 TAATTTATCCACGCGCGTTACTGATTAGAAGATGAAGCACTTGGCTACTTTGGGATATTC 2127628 Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 | | | ||| ||||||||| |||||| |||||||||||||| |||| | || ||| Sbjct 2127629 --GGCTTCGCCCACCGTTTACCAGCGCTTCATTGAATTTCTTCACATTGATAATCTGAGT 2127686 Query 506 ACTGGGCAGAAATCACATTGCGTCAA 531 |||||||| | || ||||||||| Sbjct 2127687 ACTGGGCAAACAT--TTTTGCGTCAA 2127710 >seq1282 Length=6853 Score = 159 bits (176), Expect = 1e-36 Identities = 130/157 (83%), Gaps = 7/157 (4%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-----CC 229 ||| || | ||| |||| ||| ||||||| | ||||||||||||||||| ||| || Sbjct 3263 CCGTTTTACTGAATAAGAAAAGAAACGATGACGGTAGTGGTATTTCACTGGCGACAGGCC 3322 Query 230 GAAACGG--CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 ||| | ||||||||||||||||||| ||| ||| |||||||||||||||||||| Sbjct 3323 GAAGCCCATCTCCCACTTATTCTACACCCGTCATGTCTCCTCACAAAGTCGGACTAGAGT 3382 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 ||||||||||||||||||||||||||||| |||| || Sbjct 3383 CAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTCTGC 3419 Score = 87.8 bits (96), Expect = 6e-15 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||| || || |||| || || |||| | |||| |||||||||||||| Sbjct 3021 CTTTTACTCCACGCCAGGTTTCCGTCCTGGCTGAGCTCACCTTGGGACACCTGCGTTACC 3080 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 ||| |||||||| ||||||||| ||||| |||| ||||||| |||| ||| Sbjct 3081 ATTTGACAGATGTACCGCCCCAGTCAAACCCCCCGCCTGACATTGTCTTCA 3131 >seq132 Length=1381212 Score = 147 bits (162), Expect = 7e-33 Identities = 122/148 (82%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-----CC 229 ||| || | ||| |||| ||| ||||||| | ||||||||||||||||| ||| || Sbjct 52991 CCGTTTTACTGAATAAGCAAAGAAACGATGACGGTAGTGGTATTTCACTGGCGACAGGCC 53050 Query 230 GAAACGG--CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 ||| | ||||||||||||||||||| ||| ||| |||||||||||||||||||| Sbjct 53051 GAAGCCCATCTCCCACTTATTCTACACCCGTCATGTCTCCTCACAAAGTCGGACTAGAGT 53110 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGC 315 |||||||||||||||||||||||| ||| Sbjct 53111 CAAGCTCAACAGGGTCTTCTTTCCACGC 53138 >seq416 Length=410017 Score = 145 bits (160), Expect = 2e-32 Identities = 85/88 (97%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 401513 TCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACATTGACATTCAGA 401454 Query 504 GCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||| Sbjct 401453 GCACTGGGCAGAAATCACATTGCGTCAA 401426 >seq1178 Length=8769 Score = 134 bits (148), Expect = 5e-29 Identities = 77/79 (97%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 7752 TAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAACTAG 7811 Query 414 ATGACGAGGCATTTGGCTA 432 ||||||||||||||||||| Sbjct 7812 ATGACGAGGCATTTGGCTA 7830 >seq233 Length=855571 Score = 98.7 bits (108), Expect = 3e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 536441 TTACCCGCTTTTCATTGAATTTCTTCACATTGACATTCAGAGCACTGGGCAGGAATCACA 536500 Query 523 TTGCGTCAA 531 ||||||||| Sbjct 536501 TTGCGTCAA 536509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634509683968