Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq16 387 4e-105 seq101 333 8e-89 seq498 309 9e-82 seq426 122 3e-25 >seq16 Length=3577201 Score = 387 bits (428), Expect = 4e-105 Identities = 366/455 (80%), Gaps = 29/455 (6%) Strand=Plus/Minus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 |||||||||||||||||| || |||||||||| |||||||||||| |||||||||||||| Sbjct 752638 GGGTAATTTGCGCGCCTGATGTCTTCCTTGGAAGTGGTAGCCGTTCCTCAGGCTCCCTCT 752579 Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195 ||||||||||||||| ||||||||||||||||| |||||||||||| | |||||| Sbjct 752578 CCGGAATCGAACCCTGATTCCCCGTTACCCGTTATCACCATGGTAGGCAGGTCACCTACC 752519 Query 196 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC--ATGCGA 253 ||||||| ||||||||||||| ||||||| || || |||||| | ||||||| ||||| Sbjct 752518 ATCGAAAATTGATAGGGCAGACATTTGAAAGATCCGTCGCCGACACAAGGCCGACTGCGA 752459 Query 254 TTCGTTAAGTTATTATGA---ATCAC------CAAGGA--GC-CCCGAAG----GGC--G 295 | || ||||||| || ||||| ||| || || |||||| || | Sbjct 752458 TCAGTAAAGTTATCCAGAGTCATCACAGAATGCAACGACGGCAACCGAAGTCACCGCCGG 752399 Query 296 TTGGTTTTTTATCTAAT-AAATACACCCCTTCC----GAAGTC-GGGGTTTTTAGCATGT 349 |||||| | | |||||| |||| ||||| |||| ||| ||| | | |||||| Sbjct 752398 TTGGTTCTGT-TCTAATAAAATCCACCCGTTCCCTTGCGGGTCAGGGCATAGTGGCATGT 752340 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| || |||||||||||||| | |||| | | || ||| ||| | Sbjct 752339 ATTAGCTCTAGAATTACTACAGTTATCCATGTAGT-ATGTACGACCCAAGGAACCATAGC 752281 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||||||| ||||||| || | || | || ||||||||||||||||| Sbjct 752280 TGATTTAATGAGCCATTCGCGGTTTCACCGT-TTGAAGGTTTGTACTTAGACATGCATGG 752222 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||||||||||||||||||||||||| Sbjct 752221 CTTAATCTCTGAGACAAGCATATGACTACTGGCAG 752187 >seq101 Length=1509306 Score = 333 bits (368), Expect = 8e-89 Identities = 376/488 (77%), Gaps = 33/488 (7%) Strand=Plus/Minus Query 12 AATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCG 70 |||||| || | | || ||| || ||||| |||||| | ||||||||||||||||| || Sbjct 973025 AATTACGGAGCCTCTAATGAGTCCCGTATCCGTATTTCTCGTCACTACCTCCCCGTGCCG 972966 Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 972965 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAGGTGGTGGCCGTTTCTCAGGCTC 972906 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190 |||||||||||||||||||| ||| ||||||| ||||| |||||||||||| | Sbjct 972905 CCTCTCCGGAATCGAACCCTGATTTCCCGTTATCCGTTATCACCATGGTAGGCAGGCCAC 972846 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC--A 248 |||||||||||| |||| |||||||| ||||||| || || |||||| | ||||||| Sbjct 972845 CTACCATCGAAAATTGAAAGGGCAGACATTTGAAAGATCCTTCGCCGACACAAGGCCGAC 972786 Query 249 TGCGATTCGTTAAGTTATTATGA---ATCAC------CAAGG--AGC-CCCGAAG----G 292 |||||| || |||||| || ||||| ||| | ||| |||||| Sbjct 972785 TGCGATCAGTACAGTTATCCAGAGTCATCACAGAATGCAACGATAGCAACCGAAGTCACC 972726 Query 293 GC--GTTGGTTTTTTATCTAATAAATACACC-----CCTTCCGAAGTC-GGGGTTTTTAG 344 || ||| ||| | | |||||||||| |||| |||| || ||| ||| | | Sbjct 972725 GCCGGTTCGTTCTGT-TCTAATAAATCCACCCGTTTCCTTGCG-GGTCAGGGCATAGTGA 972668 Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 |||||||||||||||||||||| || ||| |||||| ||| | |||| ||| || || Sbjct 972667 CATGTATTAGCTCTAGAATTACTACAGTTGTCCATGCAGT-ATGTACGATCCAAGGCACT 972609 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTT-CACTGTATAGATTGCTTATACTTAGACAT 463 ||| |||||||| ||| ||||||| |||| ||| || | || | || | ||||||| | Sbjct 972608 ATAGCTGATTTACCGAGTCATTCGCGGTTTACAC-GT-TTGAAGGTTTGTGCTTAGACGT 972551 Query 464 GCATGGCT 471 |||||||| Sbjct 972550 GCATGGCT 972543 >seq498 Length=288213 Score = 309 bits (342), Expect = 9e-82 Identities = 313/397 (79%), Gaps = 28/397 (7%) Strand=Plus/Minus Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||||||| |||||||||| ||||||||||||||||| |||||||||||| | ||| Sbjct 71835 TCTCCGGGATCGAACCCTGATTCCCCGTTACCCGTTATCACCATGGTAGGCAGGTCACCT 71776 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCA--TG 250 |||||||||| ||||||||||||| ||||||| || || |||||| | ||||||| || Sbjct 71775 ACCATCGAAAATTGATAGGGCAGACATTTGAAAGATCCGTCGCCGACACAAGGCCGACTG 71716 Query 251 CGATTCGTTAAGTTATTATGA---ATCAC------CAAGGA--GCC-CCGAAGG----GC 294 |||| || ||||||| || ||||| ||| || || |||||| || Sbjct 71715 CGATCAGTAAAGTTATCCAGAGTCATCACAGAATGCAACGACGGCAACCGAAGTCACCGC 71656 Query 295 --GTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAG----TCGGGGTTTT-TAGCAT 347 ||||||| | | |||||||||| ||||| |||| | || ||| | | |||| Sbjct 71655 CGGTTGGTTCTGT-TCTAATAAATCCACCCGTTCCCTTGCGGGTCAGGGCATAGTGGCAT 71597 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| || ||||||||||||||| | ||| ||| || ||| ||| Sbjct 71596 GTATTAGCTCTAGAATTACTACAGTTATCCATGTAGTATG-TACGATCCAAGGAACCATA 71538 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 ||||||||||||||||||||| ||||||| || | || | || ||||||||||||||| Sbjct 71537 GCTGATTTAATGAGCCATTCGCGGTTTCACCGTTT-GAAGGTTTGTACTTAGACATGCAT 71479 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||| |||||||||||||||||||||||||| Sbjct 71478 GGCTTAATCTCTGAGACAAGCATATGACTACTGGCAG 71442 >seq426 Length=395994 Score = 122 bits (134), Expect = 3e-25 Identities = 130/168 (77%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| |||||| || | | ||| | ||||| || ||||| ||||||| | Sbjct 156343 TACTCATTCGTATTACAGAGCATCTATTGAGTGCCGTATCCGT-TTTATCGTCACTAATT 156401 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | ||| |||| |||||||||||||||||| | ||||||||||| || ||| | |||||| Sbjct 156402 CTGCGTATCGG-ATTGGGTAATTTGCGCGCATTCTGCCTTCCTTCGAAGTGATCGCCGTT 156460 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT 168 ||| ||| || | ||||||||| ||||| |||| || ||||| ||| Sbjct 156461 TCTTGGGCCCCTTATCCGGAATCCTACCCTGATTCTCCATTACCTGTT 156508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509762369536