Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09]
42,216 sequences; 620,452,578 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq16 387 4e-105
seq101 333 8e-89
seq498 309 9e-82
seq426 122 3e-25
>seq16
Length=3577201
Score = 387 bits (428), Expect = 4e-105
Identities = 366/455 (80%), Gaps = 29/455 (6%)
Strand=Plus/Minus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135
|||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||
Sbjct 752638 GGGTAATTTGCGCGCCTGATGTCTTCCTTGGAAGTGGTAGCCGTTCCTCAGGCTCCCTCT 752579
Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195
||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||
Sbjct 752578 CCGGAATCGAACCCTGATTCCCCGTTACCCGTTATCACCATGGTAGGCAGGTCACCTACC 752519
Query 196 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC--ATGCGA 253
||||||| ||||||||||||| ||||||| || || |||||| | ||||||| |||||
Sbjct 752518 ATCGAAAATTGATAGGGCAGACATTTGAAAGATCCGTCGCCGACACAAGGCCGACTGCGA 752459
Query 254 TTCGTTAAGTTATTATGA---ATCAC------CAAGGA--GC-CCCGAAG----GGC--G 295
| || ||||||| || ||||| ||| || || |||||| || |
Sbjct 752458 TCAGTAAAGTTATCCAGAGTCATCACAGAATGCAACGACGGCAACCGAAGTCACCGCCGG 752399
Query 296 TTGGTTTTTTATCTAAT-AAATACACCCCTTCC----GAAGTC-GGGGTTTTTAGCATGT 349
|||||| | | |||||| |||| ||||| |||| ||| ||| | | ||||||
Sbjct 752398 TTGGTTCTGT-TCTAATAAAATCCACCCGTTCCCTTGCGGGTCAGGGCATAGTGGCATGT 752340
Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409
||||||||||||||||| || |||||||||||||| | |||| | | || ||| ||| |
Sbjct 752339 ATTAGCTCTAGAATTACTACAGTTATCCATGTAGT-ATGTACGACCCAAGGAACCATAGC 752281
Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469
|||||||||||||||||||| ||||||| || | || | || |||||||||||||||||
Sbjct 752280 TGATTTAATGAGCCATTCGCGGTTTCACCGT-TTGAAGGTTTGTACTTAGACATGCATGG 752222
Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||| ||||||||||||||||||||||||||
Sbjct 752221 CTTAATCTCTGAGACAAGCATATGACTACTGGCAG 752187
>seq101
Length=1509306
Score = 333 bits (368), Expect = 8e-89
Identities = 376/488 (77%), Gaps = 33/488 (7%)
Strand=Plus/Minus
Query 12 AATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCG 70
|||||| || | | || ||| || ||||| |||||| | ||||||||||||||||| ||
Sbjct 973025 AATTACGGAGCCTCTAATGAGTCCCGTATCCGTATTTCTCGTCACTACCTCCCCGTGCCG 972966
Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 972965 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAGGTGGTGGCCGTTTCTCAGGCTC 972906
Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190
|||||||||||||||||||| ||| ||||||| ||||| |||||||||||| |
Sbjct 972905 CCTCTCCGGAATCGAACCCTGATTTCCCGTTATCCGTTATCACCATGGTAGGCAGGCCAC 972846
Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC--A 248
|||||||||||| |||| |||||||| ||||||| || || |||||| | |||||||
Sbjct 972845 CTACCATCGAAAATTGAAAGGGCAGACATTTGAAAGATCCTTCGCCGACACAAGGCCGAC 972786
Query 249 TGCGATTCGTTAAGTTATTATGA---ATCAC------CAAGG--AGC-CCCGAAG----G 292
|||||| || |||||| || ||||| ||| | ||| ||||||
Sbjct 972785 TGCGATCAGTACAGTTATCCAGAGTCATCACAGAATGCAACGATAGCAACCGAAGTCACC 972726
Query 293 GC--GTTGGTTTTTTATCTAATAAATACACC-----CCTTCCGAAGTC-GGGGTTTTTAG 344
|| ||| ||| | | |||||||||| |||| |||| || ||| ||| | |
Sbjct 972725 GCCGGTTCGTTCTGT-TCTAATAAATCCACCCGTTTCCTTGCG-GGTCAGGGCATAGTGA 972668
Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404
|||||||||||||||||||||| || ||| |||||| ||| | |||| ||| || ||
Sbjct 972667 CATGTATTAGCTCTAGAATTACTACAGTTGTCCATGCAGT-ATGTACGATCCAAGGCACT 972609
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTT-CACTGTATAGATTGCTTATACTTAGACAT 463
||| |||||||| ||| ||||||| |||| ||| || | || | || | ||||||| |
Sbjct 972608 ATAGCTGATTTACCGAGTCATTCGCGGTTTACAC-GT-TTGAAGGTTTGTGCTTAGACGT 972551
Query 464 GCATGGCT 471
||||||||
Sbjct 972550 GCATGGCT 972543
>seq498
Length=288213
Score = 309 bits (342), Expect = 9e-82
Identities = 313/397 (79%), Gaps = 28/397 (7%)
Strand=Plus/Minus
Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192
||||||| |||||||||| ||||||||||||||||| |||||||||||| | |||
Sbjct 71835 TCTCCGGGATCGAACCCTGATTCCCCGTTACCCGTTATCACCATGGTAGGCAGGTCACCT 71776
Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCA--TG 250
|||||||||| ||||||||||||| ||||||| || || |||||| | ||||||| ||
Sbjct 71775 ACCATCGAAAATTGATAGGGCAGACATTTGAAAGATCCGTCGCCGACACAAGGCCGACTG 71716
Query 251 CGATTCGTTAAGTTATTATGA---ATCAC------CAAGGA--GCC-CCGAAGG----GC 294
|||| || ||||||| || ||||| ||| || || |||||| ||
Sbjct 71715 CGATCAGTAAAGTTATCCAGAGTCATCACAGAATGCAACGACGGCAACCGAAGTCACCGC 71656
Query 295 --GTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAG----TCGGGGTTTT-TAGCAT 347
||||||| | | |||||||||| ||||| |||| | || ||| | | ||||
Sbjct 71655 CGGTTGGTTCTGT-TCTAATAAATCCACCCGTTCCCTTGCGGGTCAGGGCATAGTGGCAT 71597
Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407
||||||||||||||||||| || ||||||||||||||| | ||| ||| || ||| |||
Sbjct 71596 GTATTAGCTCTAGAATTACTACAGTTATCCATGTAGTATG-TACGATCCAAGGAACCATA 71538
Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467
||||||||||||||||||||| ||||||| || | || | || |||||||||||||||
Sbjct 71537 GCTGATTTAATGAGCCATTCGCGGTTTCACCGTTT-GAAGGTTTGTACTTAGACATGCAT 71479
Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||| ||||||||||||||||||||||||||
Sbjct 71478 GGCTTAATCTCTGAGACAAGCATATGACTACTGGCAG 71442
>seq426
Length=395994
Score = 122 bits (134), Expect = 3e-25
Identities = 130/168 (77%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||| |||||| || | | ||| | ||||| || ||||| ||||||| |
Sbjct 156343 TACTCATTCGTATTACAGAGCATCTATTGAGTGCCGTATCCGT-TTTATCGTCACTAATT 156401
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
| ||| |||| |||||||||||||||||| | ||||||||||| || ||| | ||||||
Sbjct 156402 CTGCGTATCGG-ATTGGGTAATTTGCGCGCATTCTGCCTTCCTTCGAAGTGATCGCCGTT 156460
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT 168
||| ||| || | ||||||||| ||||| |||| || ||||| |||
Sbjct 156461 TCTTGGGCCCCTTATCCGGAATCCTACCCTGATTCTCCATTACCTGTT 156508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509762369536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |