Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq46 123 2e-23 >seq46 Length=2247445 Score = 123 bits (136), Expect = 2e-23 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 66283 ACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCAT 66342 || |||||| | ||||||| ||| || | ||| || ||| || || || ||||| Sbjct 183283 ACCTGGACATTCGTGTGGATCCATGAGTGTCCACTCCTCATTGGCCTCCACTCGTCGCAT 183342 Query 66343 AAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC 66402 || | ||| |||||||||||||| ||||| | ||| || | || || || ||| Sbjct 183343 GAAGATATCCGGTATCCAGAGGGCATAGAACAAATCCCGACCACGAATTTCTTCGGCGCC 183402 Query 66403 GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGAT 66462 |||||| |||| || | ||||| | || ||| | |||||| ||||||||||||| Sbjct 183403 AGTATTTTTTCGCATTTCAATGAACTGGAGGACGTCCGGATGCCACGGTTCCAGGTAGAC 183462 Query 66463 GGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAA 66522 |||||| | || ||||| ||||| ||||||| ||||||||| || || || Sbjct 183463 GGCGAAAGCACCGGGGCGTTTATTTCCACCCTGGTCGATGTAGCGAGCAGTGTTATTAAA 183522 Query 66523 GACACGCAACATCGGTAC 66540 ||||||||||| || || Sbjct 183523 CACACGCAACATTGGAAC 183540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397363448282240