Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10868 224 2e-56 seq43977 122 1e-25 seq743 104 4e-20 seq256312 84.2 4e-14 >seq10868 Length=6470 Score = 224 bits (248), Expect = 2e-56 Identities = 178/214 (83%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||| || |||||||| || ||| |||||||||||||||||||||| Sbjct 2889 TCATCAGTAGGGTAAAACCAATCTGTCTCACGATGGTTTAAACCCAGCTCACGTTCCCTA 2830 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | ||| || |||||| | ||| |||||||| || |||||| || ||||||| Sbjct 2829 TAAGTAAATGGGCAATCCCATCCTTGGTGAATTCTGATTTACAATGATAAGATGAGCCGA 2770 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||| |||||| |||||||||||| ||||| |||||||| ||||||||| Sbjct 2769 TATCGAAGGATCTAAAAGCGACGTCGCTATGAGAATTTGGCCGCCACAAGTCAGTTATCC 2710 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||||||||||| ||||||| || ||||| Sbjct 2709 CTGTGGTAACTTTTCTGACACCTCTTGCTTCAAA 2676 >seq43977 Length=3590 Score = 122 bits (134), Expect = 1e-25 Identities = 69/70 (99%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 70 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 11 Query 91 TTAGTGGGTG 100 |||||||||| Sbjct 10 TTAGTGGGTG 1 >seq743 Length=12286 Score = 104 bits (114), Expect = 4e-20 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 7303 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 7362 >seq256312 Length=691 Score = 84.2 bits (92), Expect = 4e-14 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| |||||||||||||||||| || ||| | || ||||| Sbjct 463 ACCAAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGC 404 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 | ||| ||| ||| |||| | | | ||| || ||||||||||||| | || Sbjct 403 CGAACCCTTGGGACC---TTCTCCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCA 347 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || |||||||||| |||||||| || |||| |||||||| | ||| |||| Sbjct 346 AACGATTTCGTCGCTATGGACGCTTGGAAATCATCAGCCTGTTATCCCCGGAGTACCTTT 287 Query 224 T 224 | Sbjct 286 T 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851696695488